FiT-DB / Search/ Help/ Sample detail

Os07g0492000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I) (NDPK I).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.7 (0.0169) R2 : 0.287
β1 : -0.73 (0.062) R2dD : 0.224 R2D : 0.123
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.32 (0.0362) R2dN8 : 0.164 R2N8 : 0.0627
σ : 0.318
deviance : 46.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.69 0.233 14.7 -0.747 0.445 -0.463 -0.581 0.605 -0.316 19.9 50.97 65 -- --
25.43 0.235 14.7 -0.73 0.454 -0.408 -0.609 -- -0.312 19.4 49.4 54 -- --
25.58 0.236 14.7 -0.72 0.442 -0.493 -- 0.506 -0.317 20.3 51.31 55 -- --
26.18 0.238 14.7 -0.717 0.446 -0.472 -- -- -0.317 20.3 51.99 48 -- --
29.08 0.251 14.7 -0.832 -- -0.715 -- 0.896 -0.367 -- 67.59 469 -- --
28.5 0.25 14.7 -0.721 0.566 -- -0.761 -- -0.305 18.1 -- -- -- --
29.9 0.256 14.7 -0.714 0.562 -- -- -- -0.308 18.2 -- -- -- --
29.73 0.254 14.7 -0.694 -- -0.657 -- -- -0.374 -- 71.67 473 -- --
39.68 0.293 14.7 -- 0.451 -0.459 -- -- -0.24 20.2 54 48 -- --
46.3 0.318 14.7 -0.73 -- -- -- -- -0.32 -- -- -- -- --
43.34 0.308 14.7 -- 0.573 -- -- -- -0.228 18.2 -- -- -- --
40.52 0.296 14.7 -- -- -0.712 -- -- -0.334 -- 82 398 -- --
60.34 0.363 14.7 -- -- -- -- -- -0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.41 humidity 70.0 1440 > th dose dependent rect. 11 1
2 23.53 wind 1.0 43200 < th dose dependent rect. 5 1
5 24.07 wind 1.0 43200 < th dose dependent rect. 12 1
6 24.18 wind 1.0 43200 < th dose independent rect. 5 2
7 24.19 humidity 60.0 30 > th dose dependent rect. 5 15
9 24.22 precipitation 0.1 14400 > th dose dependent rect. 13 5
13 24.28 precipitation 0.1 14400 > th dose independent rect. 13 5
14 24.28 precipitation 0.1 14400 < th dose independent rect. 13 5
15 24.28 precipitation 0.1 14400 > th dose dependent rect. 16 2
16 24.28 precipitation 0.1 14400 < th dose dependent rect. 13 5
17 24.29 humidity 80.0 1440 < th dose independent rect. 11 1
22 24.31 humidity 50.0 30 > th dose dependent rect. 3 23
24 24.33 wind 1.0 14400 < th dose independent rect. 1 2
25 24.33 humidity 80.0 1440 > th dose independent rect. 10 2
29 24.34 humidity 60.0 43200 < th dose independent rect. 9 1
45 24.37 humidity 60.0 43200 > th dose independent rect. 9 1
47 24.37 wind 1.0 43200 > th dose independent rect. 5 9
48 24.37 wind 1.0 43200 > th dose independent rect. 5 12
49 24.37 humidity 50.0 30 > th dose dependent sin 23 NA
54 24.38 precipitation 0.1 14400 > th dose independent rect. 16 2
65 24.39 wind 1.0 43200 < th dose dependent rect. 7 6
81 24.43 humidity 50.0 1440 > th dose dependent rect. 11 1
85 24.45 wind 1.0 43200 > th dose independent sin 1 NA
87 24.45 wind 1.0 14400 < th dose independent rect. 1 5
90 24.46 wind 1.0 43200 > th dose independent rect. 5 1
92 24.46 humidity 90.0 1440 < th dose dependent rect. 11 1
94 24.46 humidity 90.0 720 > th dose dependent rect. 8 14
100 24.48 wind 1.0 43200 < th dose independent rect. 6 7
104 24.49 wind 1.0 43200 < th dose independent rect. 5 21
106 24.50 wind 1.0 43200 < th dose independent rect. 5 23
107 24.51 wind 1.0 14400 > th dose independent rect. 1 2
108 24.51 wind 1.0 43200 < th dose independent rect. 8 22
114 24.52 wind 1.0 43200 < th dose independent rect. 5 4
115 24.52 wind 1.0 43200 < th dose independent rect. 3 23
124 24.54 wind 1.0 43200 > th dose independent rect. 3 23
127 24.55 wind 1.0 43200 < th dose independent sin 1 NA
137 24.56 radiation 20.0 43200 > th dose independent rect. 16 1
150 24.56 wind 1.0 43200 < th dose independent rect. 5 12
154 24.56 wind 1.0 43200 > th dose independent rect. 5 23
159 24.57 wind 1.0 43200 < th dose independent rect. 5 17
165 24.57 wind 1.0 43200 < th dose dependent rect. 8 9
176 24.58 humidity 50.0 30 > th dose dependent rect. 1 23
177 24.58 humidity 50.0 30 > th dose dependent rect. 14 23
183 24.59 humidity 80.0 1440 < th dose independent rect. 10 4
184 24.59 wind 1.0 43200 > th dose independent rect. 5 15
185 24.59 wind 1.0 43200 < th dose dependent sin 23 NA
190 24.60 wind 1.0 43200 > th dose independent rect. 8 22
191 24.60 humidity 90.0 270 > th dose independent rect. 3 22
197 24.60 humidity 50.0 30 > th dose dependent rect. 21 23
205 24.62 wind 1.0 43200 < th dose independent rect. 7 4
208 24.62 wind 1.0 43200 > th dose independent rect. 21 20
210 24.62 wind 1.0 43200 < th dose dependent rect. 5 17
213 24.63 wind 1.0 43200 < th dose independent rect. 5 15
215 24.63 humidity 80.0 720 > th dose dependent rect. 3 18
222 24.64 wind 3.0 43200 < th dose dependent rect. 1 1
228 24.65 wind 1.0 43200 > th dose independent rect. 19 22
247 24.67 wind 1.0 43200 > th dose independent rect. 5 17
256 24.68 humidity 80.0 1440 > th dose independent rect. 10 4
268 24.69 wind 1.0 43200 > th dose independent rect. 21 23
281 24.70 wind 3.0 43200 < th dose dependent rect. 15 17
282 24.70 wind 3.0 43200 < th dose dependent rect. 12 20
288 24.71 wind 1.0 43200 > th dose independent rect. 23 23
297 24.71 wind 3.0 43200 < th dose dependent rect. 22 21
298 24.71 humidity 90.0 270 > th dose dependent rect. 4 22
300 24.71 humidity 90.0 30 < th dose dependent rect. 15 23
306 24.72 radiation 40.0 43200 > th dose independent rect. 14 18
313 24.72 wind 3.0 43200 < th dose dependent rect. 4 15
321 24.73 wind 1.0 43200 > th dose independent rect. 5 21
323 24.73 wind 1.0 43200 > th dose independent rect. 23 21
327 24.73 precipitation 0.1 14400 > th dose dependent sin 21 NA
329 24.73 wind 3.0 43200 < th dose dependent rect. 5 12
334 24.74 radiation 40.0 43200 > th dose independent rect. 14 2
357 24.74 wind 1.0 43200 > th dose independent rect. 23 18
361 24.74 wind 1.0 14400 < th dose dependent rect. 2 4
396 24.76 humidity 90.0 270 < th dose independent rect. 20 22
397 24.76 wind 1.0 43200 > th dose independent rect. 15 23
398 24.76 humidity 90.0 30 > th dose dependent sin 22 NA
417 24.77 humidity 90.0 270 < th dose independent rect. 6 20
428 24.77 humidity 90.0 30 < th dose dependent rect. 11 23
446 24.78 humidity 90.0 90 < th dose dependent rect. 20 22
459 24.79 wind 1.0 43200 < th dose independent rect. 19 22
469 24.79 wind 1.0 43200 < th dose dependent rect. 23 7
480 24.79 humidity 50.0 90 > th dose dependent rect. 17 23
481 24.80 wind 1.0 43200 > th dose independent no NA NA
484 24.80 wind 1.0 43200 > th dose independent rect. 3 20
487 24.80 wind 1.0 43200 < th dose independent rect. 21 23
488 24.80 humidity 80.0 720 > th dose dependent sin 23 NA
489 24.80 humidity 50.0 90 > th dose dependent no NA NA
531 24.82 wind 3.0 43200 < th dose dependent rect. 4 23
534 24.82 wind 3.0 43200 < th dose dependent rect. 18 23
555 24.83 wind 3.0 43200 < th dose dependent rect. 15 23
563 24.84 wind 1.0 43200 < th dose independent rect. 21 21
565 24.84 humidity 90.0 270 > th dose independent rect. 16 22
568 24.84 wind 3.0 43200 < th dose dependent no NA NA
585 24.85 humidity 90.0 270 > th dose independent no NA NA
598 24.85 wind 1.0 43200 < th dose independent rect. 15 23
599 24.85 wind 1.0 43200 < th dose independent rect. 23 23
601 24.85 humidity 90.0 270 > th dose independent rect. 7 23
602 24.85 humidity 90.0 270 > th dose independent rect. 13 23
616 24.85 wind 3.0 43200 < th dose dependent rect. 1 23
644 24.86 wind 3.0 43200 < th dose dependent rect. 7 23
660 24.87 humidity 90.0 270 > th dose independent rect. 19 23
667 24.87 wind 3.0 14400 < th dose dependent rect. 18 12
669 24.87 precipitation 0.1 14400 > th dose dependent rect. 4 15
677 24.87 humidity 80.0 270 > th dose dependent rect. 1 22
704 24.89 wind 1.0 43200 < th dose independent no NA NA
742 24.90 wind 1.0 14400 > th dose independent rect. 1 5
762 24.90 humidity 90.0 270 > th dose independent rect. 11 23
785 24.90 humidity 90.0 30 < th dose dependent rect. 24 18
801 24.91 wind 1.0 43200 < th dose independent rect. 3 20
805 24.91 humidity 90.0 270 > th dose independent rect. 23 23
825 24.91 humidity 50.0 270 > th dose dependent rect. 1 19
849 24.92 wind 3.0 43200 < th dose dependent sin 12 NA
857 24.92 precipitation 0.1 14400 > th dose dependent rect. 4 18
860 24.92 humidity 90.0 90 < th dose dependent rect. 22 20
865 24.93 humidity 50.0 43200 < th dose independent rect. 14 1
870 24.93 humidity 90.0 720 > th dose independent rect. 8 14
875 24.93 humidity 90.0 270 > th dose independent rect. 21 23
886 24.93 humidity 50.0 90 > th dose dependent rect. 9 23
887 24.93 humidity 50.0 30 > th dose dependent rect. 23 23
889 24.94 wind 1.0 43200 > th dose independent rect. 3 17
896 24.94 wind 3.0 43200 < th dose dependent rect. 16 1
918 24.95 wind 3.0 43200 < th dose independent rect. 14 18
990 24.97 wind 3.0 43200 > th dose independent rect. 14 18