BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0492000 Os07g0492000|AK121796
(149 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09320.1 | chr4:5923424-5924366 FORWARD LENGTH=170 236 3e-63
AT5G63310.1 | chr5:25372122-25373838 REVERSE LENGTH=232 195 6e-51
AT4G23900.1 | chr4:12424505-12426318 FORWARD LENGTH=238 186 4e-48
AT4G11010.1 | chr4:6732780-6734298 REVERSE LENGTH=239 184 1e-47
AT1G17410.1 | chr1:5968627-5969780 REVERSE LENGTH=182 85 2e-17
>AT4G09320.1 | chr4:5923424-5924366 FORWARD LENGTH=170
Length = 169
Score = 236 bits (603), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 104/149 (69%), Positives = 132/149 (88%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
MEQ+FIMIKPDGVQRGLIG++I RFEKKGF L+G+K ++VERSFA++HY DLS K FF G
Sbjct: 21 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 80
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
LV+YI+SGPVVAM+WEGK+VV TGR+IIGAT P + PGTIR D+A+++GRNVIHGSDSV
Sbjct: 81 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 140
Query: 121 DNGKKEIALWFPEGLAEWRSNLHPWIYES 149
++ +KEIALWFP+G W+S++HPW+YE+
Sbjct: 141 ESARKEIALWFPDGPVNWQSSVHPWVYET 169
>AT5G63310.1 | chr5:25372122-25373838 REVERSE LENGTH=232
Length = 231
Score = 195 bits (496), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
+E+++IM+KPDG+QRGL+G+IISRFEKKGF L G+K + A++HY DLS K FFP
Sbjct: 83 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 142
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
L+EYI SGPVV M WEG VVA+ R++IG T P +A PGTIR D AV+ GRN++HGSDS
Sbjct: 143 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 202
Query: 121 DNGKKEIALWFPEG-LAEWRSNLHPWIYE 148
+NGK+EI LWF EG L +W S L W+ E
Sbjct: 203 ENGKREIGLWFKEGELCKWDSALATWLRE 231
>AT4G23900.1 | chr4:12424505-12426318 FORWARD LENGTH=238
Length = 237
Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
ME++FI IKPDGVQRGLI +II+RFE+KG+ L G+K M + FAQ+HY DL ++PFF G
Sbjct: 87 MERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNG 146
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
L ++ SGPVVAMVWEG+ V+ GR++IGAT P ++ PGTIR D AV VGRN+IHGSD
Sbjct: 147 LCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 206
Query: 121 DNGKKEIALWF-PEGLAEWRSNLHPWIY 147
+ K EI+LWF PE L + SN WIY
Sbjct: 207 ETAKDEISLWFKPEELVSYTSNAEKWIY 234
>AT4G11010.1 | chr4:6732780-6734298 REVERSE LENGTH=239
Length = 238
Score = 184 bits (468), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
ME++FI IKPDGVQRGLI +IISRFE+KGF L G+K + + FAQ+HY DL ++PFF G
Sbjct: 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNG 147
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
L +++ SGPV+AMVWEG V+ GR++IGAT P ++ PGTIR D AV VGRN+IHGSD
Sbjct: 148 LCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGP 207
Query: 121 DNGKKEIALWF-PEGLAEWRSNLHPWIY 147
+ K EI+LWF P+ L + SN W+Y
Sbjct: 208 ETAKDEISLWFKPQELVSYTSNSEKWLY 235
>AT1G17410.1 | chr1:5968627-5969780 REVERSE LENGTH=182
Length = 181
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
E++ MIKPDGV +I + + GF + +++ A Y + S + FFP L
Sbjct: 33 ERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSFFPHL 92
Query: 62 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIHGSD 118
V Y+ SGPV+ MV E ++ V+ R +IG T +A P +IRA +N +HGSD
Sbjct: 93 VTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSD 152
Query: 119 SVDNGKKEIALWFPE 133
S + ++EI +F +
Sbjct: 153 STSSAEREIKFFFKD 167
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,430,881
Number of extensions: 133086
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 5
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)