BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0492000 Os07g0492000|AK121796
(149 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (... 306 4e-84
Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC... 254 2e-68
Os12g0548300 Similar to Nucleoside diphosphate kinase II, c... 221 2e-58
Os05g0595400 Similar to Nucleoside diphosphate kinase III (... 184 2e-47
AK119750 80 6e-16
Os02g0565100 Nucleoside-diphosphate kinase family protein 79 1e-15
AK065933 70 4e-13
>Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I)
(NDPK I)
Length = 149
Score = 306 bits (784), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG
Sbjct: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV
Sbjct: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
Query: 121 DNGKKEIALWFPEGLAEWRSNLHPWIYES 149
DNGKKEIALWFPEGLAEWRSNLHPWIYES
Sbjct: 121 DNGKKEIALWFPEGLAEWRSNLHPWIYES 149
>Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I)
(NDP kinase I) (PP18)
Length = 151
Score = 254 bits (649), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 115/148 (77%), Positives = 135/148 (91%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
+EQ+FIMIKPDGVQRGLIG++I RFEKKGFYL+ MK +NVE+SFA++HYADLS KPFF G
Sbjct: 3 LEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGG 62
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
LVEYI+SGPVVAMVWEGK VV+TGR+++GAT P A PGTIR D+AV++GRNVIHGSDSV
Sbjct: 63 LVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSV 122
Query: 121 DNGKKEIALWFPEGLAEWRSNLHPWIYE 148
+N +KEIALWFPEG+AEWRSN HPWIYE
Sbjct: 123 ENARKEIALWFPEGIAEWRSNQHPWIYE 150
>Os12g0548300 Similar to Nucleoside diphosphate kinase II, chloroplast precursor
(EC 2.7.4.6) (NDK II) (NDP kinase II) (NDPK II)
Length = 220
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/149 (67%), Positives = 119/149 (79%), Gaps = 1/149 (0%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
+EQS+IMIKPDGVQRGL+G+IISRFEKKGF L+G+K + AQ+HY DL +KPFFPG
Sbjct: 72 VEQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPG 131
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
L+EYI SGPVV M WEG VVA+ R++IGAT P +A PGTIR D AV+ GRNV+HGSDS
Sbjct: 132 LIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSP 191
Query: 121 DNGKKEIALWFPEG-LAEWRSNLHPWIYE 148
DNGK+EIALWF EG L EW S L PW+ E
Sbjct: 192 DNGKREIALWFKEGELCEWESVLTPWLVE 220
>Os05g0595400 Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III)
(NDP kinase III) (NDPK III)
Length = 239
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
ME++FI IKPDGVQRGLI +I+SRFE+KGF L +K + + FAQ+HY DL D+PFF G
Sbjct: 89 MERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNG 148
Query: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
L +++ SGPV+AMVWEG+ V+ GR++IGAT P ++ PGTIR D AV VGRN+IHGSD
Sbjct: 149 LCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
Query: 121 DNGKKEIALWF-PEGLAEWRSNLHPWIY 147
+ K EI LWF P L + SN WIY
Sbjct: 209 ETAKAEIGLWFEPRELVSYTSNEEKWIY 236
>AK119750
Length = 1213
Score = 79.7 bits (195), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 1 MEQSFIMIKPDGVQRGLIGDIISRF-EKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFP 59
++++ +IKPD V G I+S E+ GF + + + + A+Q YA+ KPFF
Sbjct: 709 LQRTLAIIKPDAVAAGSTDAILSVVTEQYGFAVLATERTRLSKPRAEQFYAEHQGKPFFN 768
Query: 60 GLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEA---APGTIRADYAVEVGRNVIHG 116
LV+++ SGP+VA+ + + R++IG TR EA P ++RA + +N HG
Sbjct: 769 SLVDFMSSGPIVALCLAKPAAITSWRKLIGPTRRHEALSKKPHSLRARFGHSDTQNACHG 828
Query: 117 SDSVDNGKKEIALWFPEGLAE 137
S+ ++EI +FP+ AE
Sbjct: 829 SEHDKAAEREIQFFFPQLPAE 849
>Os02g0565100 Nucleoside-diphosphate kinase family protein
Length = 181
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
E++ MIKPDG+ I + GF + + ++ A YA+ S + FF L
Sbjct: 36 ERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSL 95
Query: 62 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIHGSD 118
V+Y+ SGPV+ M+ E D ++ R +IG T +A P +IRA V+ +N +HGSD
Sbjct: 96 VKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSD 155
Query: 119 SVDNGKKEIALWF 131
S + +EI+ +F
Sbjct: 156 SPQSAAREISFFF 168
>AK065933
Length = 566
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/30 (100%), Positives = 30/30 (100%)
Query: 120 VDNGKKEIALWFPEGLAEWRSNLHPWIYES 149
VDNGKKEIALWFPEGLAEWRSNLHPWIYES
Sbjct: 537 VDNGKKEIALWFPEGLAEWRSNLHPWIYES 566
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,368,069
Number of extensions: 209104
Number of successful extensions: 349
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 7
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)