Os12g0548300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleoside diphosphate kinase II, chloroplast precursor (EC 2.7.4.6) (NDK II) (NDP kinase II) (NDPK II).
FiT-DB / Search/ Help/ Sample detail
|
Os12g0548300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Nucleoside diphosphate kinase II, chloroplast precursor (EC 2.7.4.6) (NDK II) (NDP kinase II) (NDPK II).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.85 | 0.483 | 10.1 | -0.0743 | 1.16 | 0.137 | 1.65 | 4.78 | -0.827 | 19.4 | 0.4618 | 1461 | -- | -- |
| 119.15 | 0.508 | 10.2 | -0.878 | 0.986 | 0.422 | 1.56 | -- | -1.05 | 19.4 | 30.45 | 944 | -- | -- |
| 111.87 | 0.493 | 10.1 | -0.119 | 1.16 | 0.166 | -- | 4.76 | -0.829 | 19.3 | 0.47 | 1404 | -- | -- |
| 123.13 | 0.517 | 10.2 | -0.891 | 0.896 | 0.477 | -- | -- | -1.08 | 19.6 | 30.46 | 879 | -- | -- |
| 154.61 | 0.579 | 10 | -0.147 | -- | 1.1 | -- | 5.88 | -0.56 | -- | 0.3 | 2323 | -- | -- |
| 124.31 | 0.523 | 10.2 | -0.754 | 1.16 | -- | 1.43 | -- | -0.999 | 19.4 | -- | -- | -- | -- |
| 129.96 | 0.534 | 10.2 | -0.788 | 1.16 | -- | -- | -- | -0.996 | 19.5 | -- | -- | -- | -- |
| 134.24 | 0.54 | 10.2 | -0.747 | -- | 1.44 | -- | -- | -1.11 | -- | 7.61 | 870 | -- | -- |
| 138.79 | 0.549 | 10.2 | -- | 1.05 | 0.673 | -- | -- | -1.02 | 19.5 | 19.91 | 3853 | -- | -- |
| 202.33 | 0.665 | 10.2 | -0.806 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 146.31 | 0.566 | 10.2 | -- | 1.17 | -- | -- | -- | -0.909 | 19.4 | -- | -- | -- | -- |
| 148.31 | 0.567 | 10.1 | -- | -- | 1.44 | -- | -- | -1.01 | -- | 8.43 | 883 | -- | -- |
| 219.45 | 0.691 | 10.1 | -- | -- | -- | -- | -- | -0.925 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 12 | 104.94 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 37 | 106.24 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 18 |
| 43 | 106.39 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 49 | 106.57 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 52 | 106.59 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 62 | 106.75 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 73 | 106.81 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 86 | 106.92 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 88 | 106.95 | wind | 5.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 99 | 107.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 101 | 107.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 102 | 107.09 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 103 | 107.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 106 | 107.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 111 | 107.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 124 | 107.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 128 | 107.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 131 | 107.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 143 | 107.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 144 | 107.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 160 | 107.12 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 172 | 107.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 173 | 107.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 174 | 107.17 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 227 | 107.40 | radiation | 1.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 247 | 107.54 | radiation | 1.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 272 | 107.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 273 | 107.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 301 | 107.75 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 333 | 107.91 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 353 | 108.03 | wind | 1.0 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 363 | 108.10 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 387 | 108.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 388 | 108.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 434 | 108.36 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 439 | 108.36 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 490 | 108.51 | wind | 1.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 493 | 108.53 | radiation | 1.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 501 | 108.56 | radiation | 1.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 509 | 108.57 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 544 | 108.68 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 553 | 108.70 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 600 | 108.83 | wind | 1.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 626 | 108.91 | wind | 1.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 667 | 109.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 688 | 109.07 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 701 | 109.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 702 | 109.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 739 | 109.18 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 744 | 109.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 757 | 109.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 760 | 109.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 763 | 109.22 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 772 | 109.25 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 773 | 109.25 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 778 | 109.26 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 780 | 109.26 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 783 | 109.26 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 794 | 109.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 806 | 109.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 814 | 109.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 824 | 109.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 21 |
| 827 | 109.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 903 | 109.29 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 919 | 109.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 925 | 109.33 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 933 | 109.34 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 948 | 109.35 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 962 | 109.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |