BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0484700 Os12g0484700|AK121352
(109 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0484700 Similar to Yippee-like protein CG15309 231 1e-61
Os11g0551800 Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1) 211 1e-55
Os07g0584000 Similar to Yippee-like protein CG15309 127 2e-30
Os03g0193075 Similar to Yippee-like protein OJ1003C07.11 127 2e-30
Os03g0698500 Similar to Yippee-like protein 3 119 7e-28
Os10g0369500 Yippee-like protein family protein 92 8e-20
AK068081 89 1e-18
>Os12g0484700 Similar to Yippee-like protein CG15309
Length = 109
Score = 231 bits (588), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MVFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLM 60
MVFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLM
Sbjct: 1 MVFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLM 60
Query: 61 TGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 109
TGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW
Sbjct: 61 TGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 109
>Os11g0551800 Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1)
Length = 106
Score = 211 bits (537), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 97/106 (91%), Positives = 103/106 (97%)
Query: 4 MAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGL 63
MAELVGPRVYSCC+CRNHVCLHDDIISKAFQGRNGRAFLFSHAMN+ +G KEDRQLMTGL
Sbjct: 1 MAELVGPRVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGL 60
Query: 64 HTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 109
HTVADIYC DCREVLGWKYERA+EE+QKYKEGKFIFEK+KIVKENW
Sbjct: 61 HTVADIYCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVKENW 106
>Os07g0584000 Similar to Yippee-like protein CG15309
Length = 110
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 78/108 (72%)
Query: 1 MVFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLM 60
++F+ L GP+V+ C C D I+SK F+GR+GRA+LF +NV +G +EDR LM
Sbjct: 3 LLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRLLM 62
Query: 61 TGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 108
TGLHTV DIYC+ C+ +LGW+YE+AY E QKYKEGK+I EK ++KE
Sbjct: 63 TGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKEG 110
>Os03g0193075 Similar to Yippee-like protein OJ1003C07.11
Length = 110
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 81/108 (75%)
Query: 1 MVFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLM 60
++F+ L G V+ C CR D IISK FQG +GRA+LF H +N+ +G EDR L+
Sbjct: 3 LLFVQRLDGNGVFKCRRCRVDAASKDAIISKEFQGSSGRAYLFDHVVNICLGPNEDRYLI 62
Query: 61 TGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 108
TGLHTV DIYC+ C+++LGW+YE+AY+++QKYKEGKFI E++++ K++
Sbjct: 63 TGLHTVNDIYCSCCQQILGWRYEKAYDQSQKYKEGKFILERARMWKDS 110
>Os03g0698500 Similar to Yippee-like protein 3
Length = 129
Score = 119 bits (297), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 2 VFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMT 61
+F+ L G +VYSC +C H+ L DIISK+F ++G+A+LF+ +NV G KEDR ++T
Sbjct: 4 LFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMMIT 62
Query: 62 GLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKI 104
G+HTV+DI+C C ++GWKYE A+E++Q+YKEGKFI E+ K+
Sbjct: 63 GMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKV 105
>Os10g0369500 Yippee-like protein family protein
Length = 107
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 53/61 (86%)
Query: 47 MNVVVGAKEDRQLMTGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVK 106
+N+ +G EDR LMTGLHTV DIYC+ C+++LGW+YE+AYEE++KYKEGKFI EK+++ K
Sbjct: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARMWK 104
Query: 107 E 107
E
Sbjct: 105 E 105
>AK068081
Length = 66
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 43 FSHAMNVVVGAKEDRQLMTGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKS 102
+ +NV +G +EDR LMTGLHTV DIYC+ C+ +LGW+YE+AY E QKYKEGK+I EK
Sbjct: 1 MTSRVNVSLGPREDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKH 60
Query: 103 KIVKE 107
++KE
Sbjct: 61 MMLKE 65
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,603,701
Number of extensions: 127357
Number of successful extensions: 360
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 7
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)