Os03g0698500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yippee-like protein 3.
FiT-DB / Search/ Help/ Sample detail
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Os03g0698500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yippee-like protein 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.04 | 0.258 | 13.2 | -0.0947 | 0.713 | -0.515 | -0.893 | -0.993 | -0.0452 | 21.1 | 20.19 | 114 | -- | -- |
| 31.03 | 0.259 | 13.2 | -0.0989 | 0.735 | -0.427 | -0.704 | -- | -0.0264 | 20.9 | 16.94 | 167 | -- | -- |
| 32.22 | 0.264 | 13.2 | -0.0747 | 0.728 | -0.47 | -- | -0.413 | -0.0489 | 21.3 | 21.83 | 125 | -- | -- |
| 32.36 | 0.265 | 13.2 | -0.0717 | 0.73 | -0.393 | -- | -- | -0.05 | 21.2 | 16.8 | 167 | -- | -- |
| 48.76 | 0.327 | 13.2 | -0.065 | -- | -0.911 | -- | 0.172 | -0.0799 | -- | -24.86 | 35 | -- | -- |
| 33.89 | 0.273 | 13.2 | -0.0922 | 0.82 | -- | -0.546 | -- | -0.0702 | 21.8 | -- | -- | -- | -- |
| 35.02 | 0.277 | 13.2 | -0.072 | 0.821 | -- | -- | -- | -0.0697 | 21.9 | -- | -- | -- | -- |
| 48.83 | 0.327 | 13.2 | -0.0602 | -- | -0.911 | -- | -- | -0.0794 | -- | -24.86 | 35 | -- | -- |
| 32.49 | 0.265 | 13.2 | -- | 0.734 | -0.402 | -- | -- | -0.0412 | 21.2 | 16.32 | 167 | -- | -- |
| 75.52 | 0.406 | 13.2 | -0.0625 | -- | -- | -- | -- | -0.0695 | -- | -- | -- | -- | -- |
| 35.15 | 0.277 | 13.2 | -- | 0.821 | -- | -- | -- | -0.0617 | 21.9 | -- | -- | -- | -- |
| 48.43 | 0.324 | 13.2 | -- | -- | -0.921 | -- | -- | -0.0707 | -- | -108.9 | 5 | -- | -- |
| 75.62 | 0.406 | 13.2 | -- | -- | -- | -- | -- | -0.0626 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 28.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 14 | 28.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 21 | 28.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 37 | 29.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 38 | 29.09 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 41 | 29.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 44 | 29.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 11 |
| 83 | 29.39 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 6 | 13 |
| 93 | 29.42 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 107 | 29.51 | radiation | 20 | 270 | < th | dose independent | rect. | 22 | 12 |
| 122 | 29.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 156 | 29.71 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 167 | 29.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 183 | 29.78 | radiation | 40 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 200 | 29.82 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 201 | 29.83 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 229 | 29.85 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 242 | 29.89 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 7 |
| 287 | 29.94 | radiation | 40 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 301 | 29.99 | radiation | 30 | 90 | < th | dose independent | rect. | 23 | 20 |
| 307 | 30.01 | radiation | 20 | 270 | < th | dose independent | rect. | 21 | 21 |
| 312 | 30.02 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 6 | 5 |
| 329 | 30.05 | temperature | 30 | 10 | < th | dose independent | sin | 5 | NA |
| 338 | 30.07 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 16 |
| 342 | 30.08 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 354 | 30.11 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 389 | 30.14 | radiation | 40 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 394 | 30.15 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 439 | 30.17 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 13 |
| 442 | 30.18 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 5 |
| 459 | 30.18 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 7 | 13 |
| 480 | 30.18 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 499 | 30.21 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 504 | 30.21 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 11 |
| 522 | 30.24 | temperature | 30 | 10 | > th | dose independent | sin | 4 | NA |
| 524 | 30.24 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 6 |
| 543 | 30.25 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 613 | 30.28 | radiation | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 619 | 30.28 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 620 | 30.29 | radiation | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 623 | 30.29 | radiation | 20 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 624 | 30.29 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 625 | 30.29 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 13 |
| 630 | 30.30 | radiation | 30 | 90 | < th | dose independent | rect. | 6 | 23 |
| 633 | 30.30 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 634 | 30.30 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 667 | 30.31 | radiation | 20 | 720 | > th | dose independent | rect. | 9 | 4 |
| 678 | 30.32 | temperature | 30 | 90 | < th | dose independent | rect. | 23 | 12 |
| 702 | 30.33 | radiation | 20 | 90 | > th | dose dependent | no | NA | NA |
| 703 | 30.33 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 8 | 3 |
| 821 | 30.34 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 839 | 30.36 | radiation | 40 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 861 | 30.37 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 873 | 30.38 | radiation | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 892 | 30.38 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 907 | 30.39 | radiation | 40 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 930 | 30.42 | radiation | 20 | 720 | > th | dose independent | rect. | 11 | 2 |