BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0698500 Os03g0698500|AK109500
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0698500 Similar to Yippee-like protein 3 264 1e-71
Os11g0551800 Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1) 119 4e-28
Os03g0193075 Similar to Yippee-like protein OJ1003C07.11 119 7e-28
Os12g0484700 Similar to Yippee-like protein CG15309 119 8e-28
Os07g0584000 Similar to Yippee-like protein CG15309 116 4e-27
Os10g0369500 Yippee-like protein family protein 79 7e-16
AK068081 78 2e-15
>Os03g0698500 Similar to Yippee-like protein 3
Length = 129
Score = 264 bits (674), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60
MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM
Sbjct: 1 MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60
Query: 61 ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFVTHDAH 120
ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFVTHDAH
Sbjct: 61 ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFVTHDAH 120
Query: 121 VGGSDVDDV 129
VGGSDVDDV
Sbjct: 121 VGGSDVDDV 129
>Os11g0551800 Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1)
Length = 106
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 73/94 (77%)
Query: 12 KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMMITGMHTVSDIF 71
+VYSC HC H+ L DIISK+F ++G+A+LF+ +N++ G KEDR ++TG+HTV+DI+
Sbjct: 8 RVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIY 67
Query: 72 CVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKV 105
C C ++GWKYE A E+SQ+YKEGKFI E+ K+
Sbjct: 68 CRDCREVLGWKYERAFEESQKYKEGKFIFEKAKI 101
>Os03g0193075 Similar to Yippee-like protein OJ1003C07.11
Length = 110
Score = 119 bits (297), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 1 MGRLFVMHLEGK-VYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRM 59
MG LFV L+G V+ C+ C IISK F G+AYLF+ VVN+ G EDR
Sbjct: 1 MGLLFVQRLDGNGVFKCRRCRVDAASKDAIISKEFQGSSGRAYLFDHVVNICLGPNEDRY 60
Query: 60 MITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKV 105
+ITG+HTV+DI+C C I+GW+YE A+++SQ+YKEGKFILER ++
Sbjct: 61 LITGLHTVNDIYCSCCQQILGWRYEKAYDQSQKYKEGKFILERARM 106
>Os12g0484700 Similar to Yippee-like protein CG15309
Length = 109
Score = 119 bits (297), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 4 LFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMMIT 62
+F+ L G +VYSC +C H+ L DIISK+F ++G+A+LF+ +NV G KEDR ++T
Sbjct: 2 VFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMT 61
Query: 63 GMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKV 105
G+HTV+DI+C C ++GWKYE A+E++Q+YKEGKFI E+ K+
Sbjct: 62 GLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKI 104
>Os07g0584000 Similar to Yippee-like protein CG15309
Length = 110
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 1 MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRM 59
MG LFV L G KV+ CK C I+SK F +HG+AYLF+ VVNV+ G +EDR+
Sbjct: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
Query: 60 MITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILER 102
++TG+HTV+DI+C C ++GW+YE A+ + Q+YKEGK+ILE+
Sbjct: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEK 103
>Os10g0369500 Yippee-like protein family protein
Length = 107
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 47/58 (81%)
Query: 48 VNVTSGVKEDRMMITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKV 105
VN++ G EDR ++TG+HTV DI+C C I+GW+YE A+E+S++YKEGKFILE+ ++
Sbjct: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARM 102
>AK068081
Length = 66
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 46/55 (83%)
Query: 48 VNVTSGVKEDRMMITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILER 102
VNV+ G +EDR+++TG+HTV+DI+C C ++GW+YE A+ + Q+YKEGK+ILE+
Sbjct: 5 VNVSLGPREDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEK 59
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,559,408
Number of extensions: 164859
Number of successful extensions: 314
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 7
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)