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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0369500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Yippee-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0445) R2 : 0.367
β1 : -1.58 (0.163) R2dD : 0.138 R2D : 0.145
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.48 (0.239) R2dE : 0.154 R2E : 0.0787
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.745 (0.0961) R2dN8 : 0.109 R2N8 : 0.0835
σ : 0.83
deviance : 317.7
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 83.95
memory length : 753
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.5
open length of G : 12.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
299.78 0.813 3.89 -1.63 0.619 1.76 -0.865 4.18 0.671 4.58 80.43 729 18.9 13
307.55 0.817 3.9 -1.68 0.583 2.09 -0.373 -- 0.674 4.71 80.85 729 18.9 12.8
301.52 0.809 3.89 -1.6 0.627 1.78 -- 4.02 0.681 4.51 80.88 730 18.9 13.1
307.45 0.817 3.89 -1.67 0.546 2.19 -- -- 0.707 4.89 81.33 727 18.9 12.9
314.66 0.826 3.9 -1.54 -- 2.43 -- 2.47 0.711 -- 84.79 742 18.7 12.5
345.93 0.872 3.93 -1.65 0.926 -- -0.137 -- 0.518 4.44 -- -- -- --
345.98 0.871 3.93 -1.65 0.926 -- -- -- 0.519 4.45 -- -- -- --
317.7 0.83 3.89 -1.58 -- 2.48 -- -- 0.745 -- 83.95 753 18.5 12.7
379.36 0.907 3.86 -- 0.587 2.22 -- -- 0.85 4.99 83.21 741 18.9 12.8
391.88 0.925 3.94 -1.61 -- -- -- -- 0.543 -- -- -- -- --
417.42 0.956 3.89 -- 0.895 -- -- -- 0.702 4.49 -- -- -- --
382.82 0.911 3.89 -- -- 2.36 -- -- 0.747 -- 88.36 765 18.3 12.9
460.26 1 3.9 -- -- -- -- -- 0.722 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.20 humidity 80 720 < th dose dependent rect. 19 13
7 304.76 humidity 80 720 < th dose independent rect. 19 13
16 306.16 humidity 80 720 > th dose independent rect. 19 13
24 307.31 humidity 80 1440 < th dose independent rect. 3 5
27 307.81 humidity 80 720 > th dose independent rect. 19 7
52 309.28 humidity 80 1440 > th dose independent rect. 3 5
53 309.32 humidity 80 1440 > th dose independent sin 9 NA
59 309.48 humidity 80 1440 < th dose independent sin 9 NA
82 310.29 humidity 80 1440 > th dose independent rect. 19 18
219 313.31 humidity 50 720 > th dose dependent rect. 18 8
308 314.72 humidity 50 1440 > th dose dependent rect. 18 14
361 315.46 humidity 90 720 < th dose dependent sin 10 NA
401 315.96 humidity 80 1440 < th dose dependent rect. 1 7
531 317.13 humidity 50 1440 > th dose dependent sin 11 NA
550 317.41 humidity 70 1440 > th dose dependent rect. 18 19
667 318.34 humidity 80 720 > th dose independent rect. 20 1
795 319.23 humidity 80 1440 > th dose independent rect. 9 23
860 319.67 humidity 80 1440 > th dose independent no NA NA
886 319.82 temperature 10 30 > th dose dependent rect. 6 20
892 319.85 humidity 80 1440 > th dose independent rect. 23 23
899 319.87 humidity 80 1440 < th dose dependent rect. 6 1
901 319.88 humidity 80 1440 < th dose independent rect. 10 22
952 320.16 humidity 80 1440 < th dose independent no NA NA
957 320.19 humidity 80 1440 > th dose independent rect. 3 23
970 320.25 humidity 80 1440 > th dose independent rect. 5 23