BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0369500 Os10g0369500|AK071370
(107 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130 65 1e-11
AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107 64 1e-11
AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163 56 5e-09
AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131 52 4e-08
AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129 51 1e-07
AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122 49 4e-07
AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106 45 5e-06
>AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130
Length = 129
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRXXXXXXXXXXXXXGKFILEKARMWK 104
VNIS+GP E+R +++G+HTV DI+C CC Q +GW+ GKF+LE+ R+
Sbjct: 48 VNISMGPLEERLMLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVD 107
Query: 105 E 105
E
Sbjct: 108 E 108
>AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107
Length = 106
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRXXXXXXXXXXXXXGKFILEKARMWK 104
+NI +GP EDR L+TGLHTV DI C C + LGW+ GKFI EKA++ K
Sbjct: 44 MNIVVGPKEDRNLLTGLHTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVK 103
Query: 105 E 105
E
Sbjct: 104 E 104
>AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163
Length = 162
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRXXXXXXXXXXXXXGKFILEKARMW 103
VN+ G EDR +MTG+HTV DIYC C +GW+ GK +LE+ ++W
Sbjct: 81 VNVYAGKKEDRMMMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKVW 139
>AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131
Length = 130
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRXXXXXXXXXXXXXGKFILEKARM 102
N+S+G E+R +MTG HTV DI+C C I+GW+ GK +LE+ ++
Sbjct: 48 ANVSIGETEERLMMTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKI 105
>AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129
Length = 128
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRXXXXXXXXXXXXXGKFILEKARM 102
VN+++G E R ++TG HTV DI+C C ++GW+ GKFILE+ ++
Sbjct: 48 VNVTVGEKEHRVMITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKV 105
>AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122
Length = 121
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRXXXXXXXXXXXXXGKFILE 98
VN+S+G EDR ++TGLH V DI+C C +GW+ GK +LE
Sbjct: 48 VNVSVGEKEDRMMITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLE 101
>AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106
Length = 105
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRXXXXXXXXXXXXXGKFILEKARMWK 104
+N+ +GP R L+TG + V D+ CS C + LGW+ G F++EK ++ K
Sbjct: 44 MNVVVGPKIGRKLITGSYVVADVMCSKCGETLGWKYVETFDLKQRYKEGMFVIEKLKLTK 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.336 0.143 0.527
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,230,938
Number of extensions: 71886
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 7
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 105 (45.1 bits)