Os12g0484700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yippee-like protein CG15309.
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Os12g0484700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yippee-like protein CG15309.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.35 | 0.241 | 9.46 | -0.53 | 0.176 | 0.569 | -0.674 | -0.242 | -0.0593 | 14.3 | 37.81 | 12 | -- | -- |
| 26.46 | 0.24 | 9.47 | -0.51 | 0.173 | 0.566 | -0.562 | -- | -0.0618 | 14.5 | 40.01 | 12 | -- | -- |
| 27 | 0.242 | 9.47 | -0.525 | 0.149 | 0.526 | -- | 0.23 | -0.0667 | 15.8 | 38.89 | 12 | -- | -- |
| 27.18 | 0.243 | 9.47 | -0.543 | 0.159 | 0.518 | -- | -- | -0.0644 | 16.3 | 40 | 12 | -- | -- |
| 28.03 | 0.247 | 9.47 | -0.541 | -- | 0.464 | -- | 0.244 | -0.0692 | -- | 42.97 | 11 | -- | -- |
| 30.77 | 0.26 | 9.48 | -0.54 | 0.345 | -- | 0.509 | -- | -0.0742 | 22.8 | -- | -- | -- | -- |
| 31.84 | 0.264 | 9.48 | -0.56 | 0.344 | -- | -- | -- | -0.0753 | 22.6 | -- | -- | -- | -- |
| 28.21 | 0.247 | 9.47 | -0.55 | -- | 0.464 | -- | -- | -0.0743 | -- | 42.5 | 9 | -- | -- |
| 34.93 | 0.275 | 9.45 | -- | 0.176 | 0.544 | -- | -- | -0.0037 | 15.8 | 40.35 | 12 | -- | -- |
| 39.11 | 0.292 | 9.47 | -0.554 | -- | -- | -- | -- | -0.0736 | -- | -- | -- | -- | -- |
| 40.12 | 0.296 | 9.46 | -- | 0.34 | -- | -- | -- | -0.0129 | 22.5 | -- | -- | -- | -- |
| 36.19 | 0.28 | 9.45 | -- | -- | 0.467 | -- | -- | -0.0108 | -- | 42.6 | 10 | -- | -- |
| 47.21 | 0.321 | 9.46 | -- | -- | -- | -- | -- | -0.0122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.35 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 3 | 24.43 | radiation | 40 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 6 | 24.55 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 13 |
| 45 | 25.53 | radiation | 40 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 59 | 25.72 | radiation | 40 | 10 | < th | dose dependent | sin | 22 | NA |
| 81 | 25.88 | radiation | 20 | 90 | < th | dose independent | sin | 23 | NA |
| 84 | 25.89 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 112 | 26.03 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 22 |
| 115 | 26.04 | radiation | 30 | 30 | < th | dose independent | rect. | 21 | 23 |
| 127 | 26.13 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 141 | 26.23 | radiation | 30 | 30 | < th | dose independent | rect. | 2 | 18 |
| 151 | 26.32 | radiation | 20 | 10 | < th | dose independent | sin | 22 | NA |
| 156 | 26.33 | radiation | 40 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 181 | 26.40 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 221 | 26.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 246 | 26.57 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 273 | 26.63 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 286 | 26.66 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 7 |
| 289 | 26.66 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 305 | 26.71 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 23 |
| 313 | 26.72 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 314 | 26.72 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 11 |
| 349 | 26.76 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 366 | 26.81 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 368 | 26.81 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 378 | 26.83 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 6 |
| 399 | 26.85 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 400 | 26.85 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 429 | 26.87 | radiation | 40 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 446 | 26.89 | radiation | 30 | 90 | < th | dose independent | rect. | 23 | 23 |
| 451 | 26.89 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 468 | 26.91 | humidity | 80 | 90 | < th | dose independent | rect. | 9 | 7 |
| 474 | 26.92 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 6 |
| 497 | 26.94 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 504 | 26.95 | wind | 1 | 270 | > th | dose independent | rect. | 18 | 10 |
| 519 | 26.96 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 14 |
| 574 | 27.01 | radiation | 30 | 90 | < th | dose independent | no | NA | NA |
| 602 | 27.02 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 629 | 27.05 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 650 | 27.06 | radiation | 30 | 30 | < th | dose independent | rect. | 15 | 23 |
| 667 | 27.07 | radiation | 10 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 717 | 27.10 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 833 | 27.12 | humidity | 70 | 270 | > th | dose independent | rect. | 18 | 10 |
| 834 | 27.12 | humidity | 80 | 90 | < th | dose independent | rect. | 4 | 12 |
| 983 | 27.15 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 10 |
| 987 | 27.15 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 11 |