BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0484700 Os12g0484700|AK121352
(109 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107 193 2e-50
AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163 119 4e-28
AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130 116 2e-27
AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129 115 3e-27
AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122 114 1e-26
AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131 113 2e-26
AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106 112 4e-26
>AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107
Length = 106
Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 88/106 (83%), Positives = 96/106 (90%)
Query: 4 MAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGL 63
MA+ +GPR+YSCCNCRNHV LHDDIISKAFQGR GRAFLFSHAMN+VVG KEDR L+TGL
Sbjct: 1 MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60
Query: 64 HTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 109
HTVADI C DC E LGWKYERAYE +QKYKEGKFIFEK+KIVKE+W
Sbjct: 61 HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106
>AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163
Length = 162
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Query: 2 VFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMT 61
+F+ L G + YSC +C+ ++ L DD++SK+FQ R+G+A+LFS +NV G KEDR +MT
Sbjct: 37 LFLVNLEG-KSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMMMT 95
Query: 62 GLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKI 104
G+HTV DIYC C +GWKYE A+E+ QKYKEGK + E+ K+
Sbjct: 96 GMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 138
>AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130
Length = 129
Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Query: 2 VFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMT 61
+F EL G R Y C CR H+ L DD++S++F R G+A+LF+ ++N+ +G E+R +++
Sbjct: 4 IFTVELEG-RSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLS 62
Query: 62 GLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKE 107
G+HTVADI+C C + +GWKYE A+E+ QKYKEGKF+ E+ +IV E
Sbjct: 63 GMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDE 108
>AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129
Length = 128
Score = 115 bits (289), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 2 VFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMT 61
+F+ +L G VYSC C+ H + +DIISK+F ++GRA+LF + +NV VG KE R ++T
Sbjct: 4 LFVIDLEG-LVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMIT 62
Query: 62 GLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIV 105
G HTVADI+C C ++GWKYE AY+++QKYKEGKFI E+ K++
Sbjct: 63 GWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVL 106
>AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122
Length = 121
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 2 VFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMT 61
VFM +L G +Y C C+ H+ DI+SK+FQ +NGRA+LF++ +NV VG KEDR ++T
Sbjct: 4 VFMVDLEG-NIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMMIT 62
Query: 62 GLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKI 104
GLH V DI+C C +GWKYE A+E++QKYKEGK + E KI
Sbjct: 63 GLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKI 105
>AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131
Length = 130
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Query: 2 VFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMT 61
+F+ L G ++YSC +C+ H+ ++DIISK+F ++G+A+LF+ NV +G E+R +MT
Sbjct: 4 LFVVNLEG-KIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLMMT 62
Query: 62 GLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKI 104
G HTVADI+C C ++GWKYE A+E+ QKYKEGK + E+ KI
Sbjct: 63 GKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKI 105
>AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106
Length = 105
Score = 112 bits (280), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 66/95 (69%)
Query: 12 VYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLHTVADIYC 71
Y C NC N + L +D+ISK F G +G AF+FSHAMNVVVG K R+L+TG + VAD+ C
Sbjct: 9 TYFCRNCENPLALGEDLISKKFVGASGPAFMFSHAMNVVVGPKIGRKLITGSYVVADVMC 68
Query: 72 NDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVK 106
+ C E LGWKY ++ Q+YKEG F+ EK K+ K
Sbjct: 69 SKCGETLGWKYVETFDLKQRYKEGMFVIEKLKLTK 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,423,948
Number of extensions: 88913
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 7
Length of query: 109
Length of database: 11,106,569
Length adjustment: 78
Effective length of query: 31
Effective length of database: 8,968,121
Effective search space: 278011751
Effective search space used: 278011751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)