BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0698500 Os03g0698500|AK109500
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40110.1  | chr2:16748159-16749357 FORWARD LENGTH=131          204   7e-54
AT3G11230.2  | chr3:3516683-3518193 FORWARD LENGTH=163            190   2e-49
AT3G08990.1  | chr3:2743590-2744709 FORWARD LENGTH=129            182   3e-47
AT3G55890.1  | chr3:20740908-20741868 FORWARD LENGTH=122          169   3e-43
AT5G53940.1  | chr5:21897164-21898589 REVERSE LENGTH=130          158   7e-40
AT4G27745.1  | chr4:13840530-13841279 FORWARD LENGTH=107          119   6e-28
AT4G27740.1  | chr4:13839148-13839616 FORWARD LENGTH=106           90   3e-19

>AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131
          Length = 130

 Score =  204 bits (520), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 1   MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60
           MGRLFV++LEGK+YSCKHC THL    DIISKSFHCKHGKAYLFNKV NV+ G  E+R+M
Sbjct: 1   MGRLFVVNLEGKIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLM 60

Query: 61  ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFV-THDA 119
           +TG HTV+DIFCV CGSIVGWKYE AHEK+Q+YKEGK +LER+K+SGPDGS+Y+V +H  
Sbjct: 61  MTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKISGPDGSNYWVSSHGR 120

Query: 120 HVGGSDVDDV 129
           H+GGSD DD 
Sbjct: 121 HIGGSDADDA 130



>AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163
          Length = 162

 Score =  190 bits (482), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 105/129 (81%)

Query: 1   MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60
           MGRLF+++LEGK YSCKHC T+L L  D++SKSF  +HGKAYLF+KVVNV +G KEDRMM
Sbjct: 34  MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 93

Query: 61  ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFVTHDAH 120
           +TGMHTV DI+CV CGS VGWKYE A EK+Q+YKEGK +LERYKV GPDG++Y+V  +  
Sbjct: 94  MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKVWGPDGNNYWVAQEVE 153

Query: 121 VGGSDVDDV 129
            G SD DD 
Sbjct: 154 AGDSDTDDA 162



>AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129
          Length = 128

 Score =  182 bits (463), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 103/125 (82%)

Query: 1   MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60
           MGRLFV+ LEG VYSCK+C TH  +++DIISKSFHCKHG+AYLF+ VVNVT G KE R+M
Sbjct: 1   MGRLFVIDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVM 60

Query: 61  ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFVTHDAH 120
           ITG HTV+DIFCV CGS+VGWKYE A++KSQ+YKEGKFILER+KV GP G  Y +  +  
Sbjct: 61  ITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLGPYGGGYDMNQNEP 120

Query: 121 VGGSD 125
           + GSD
Sbjct: 121 MTGSD 125



>AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122
          Length = 121

 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 93/116 (80%)

Query: 1   MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60
           MGR+F++ LEG +Y CK C THL    DI+SKSF CK+G+AYLFN VVNV+ G KEDRMM
Sbjct: 1   MGRVFMVDLEGNIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMM 60

Query: 61  ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFVT 116
           ITG+H V DIFCVGCGS VGWKYE AHEKSQ+YKEGK +LE YK+SGP  S+  V+
Sbjct: 61  ITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKISGPHDSNDLVS 116



>AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130
          Length = 129

 Score =  158 bits (399), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 93/128 (72%)

Query: 1   MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60
           MGR+F + LEG+ Y C+ C THL L  D++S+SFHC+ GKAYLFN+ VN++ G  E+R+M
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPDGSHYFVTHDAH 120
           ++GMHTV+DIFC  CG  VGWKYE+AHEK+Q+YKEGKF+LER ++         V  D H
Sbjct: 61  LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEIDLSTEVYIDTH 120

Query: 121 VGGSDVDD 128
              SD +D
Sbjct: 121 GSTSDTED 128



>AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107
          Length = 106

 Score =  119 bits (297), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%)

Query: 12  KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMMITGMHTVSDIF 71
           ++YSC +C  H+GL  DIISK+F  + G+A+LF+  +N+  G KEDR ++TG+HTV+DI 
Sbjct: 8   RLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVADIS 67

Query: 72  CVGCGSIVGWKYEAAHEKSQRYKEGKFILERYKVSGPD 109
           CV C   +GWKYE A+E SQ+YKEGKFI E+ K+   D
Sbjct: 68  CVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKED 105



>AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106
          Length = 105

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%)

Query: 14  YSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMMITGMHTVSDIFCV 73
           Y C++C   L L  D+ISK F    G A++F+  +NV  G K  R +ITG + V+D+ C 
Sbjct: 10  YFCRNCENPLALGEDLISKKFVGASGPAFMFSHAMNVVVGPKIGRKLITGSYVVADVMCS 69

Query: 74  GCGSIVGWKYEAAHEKSQRYKEGKFILERYKVS 106
            CG  +GWKY    +  QRYKEG F++E+ K++
Sbjct: 70  KCGETLGWKYVETFDLKQRYKEGMFVIEKLKLT 102



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,961,131
Number of extensions: 112384
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 7
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)