BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0482700 Os12g0482700|AK067039
(316 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0482700 Similar to L-galactose dehydrogenase 617 e-177
Os02g0817500 KCNAB voltage-gated K+ channel, beta subunit f... 93 2e-19
Os10g0419100 Aldo/keto reductase family protein 86 3e-17
Os04g0337500 Aldo/keto reductase family protein 86 4e-17
Os01g0618100 Similar to IN2-2 protein 84 9e-17
Os04g0338000 Similar to IN2-2 protein 71 1e-12
>Os12g0482700 Similar to L-galactose dehydrogenase
Length = 316
Score = 617 bits (1592), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/316 (95%), Positives = 302/316 (95%)
Query: 1 MELRELGATGLRVSPVGFGASPLGHVFGDVPXXXXXXXXXXXXXXGINFFDTSPYYGGTV 60
MELRELGATGLRVSPVGFGASPLGHVFGDVP GINFFDTSPYYGGTV
Sbjct: 1 MELRELGATGLRVSPVGFGASPLGHVFGDVPRDVARAAVRRALDLGINFFDTSPYYGGTV 60
Query: 61 SESVLGDCLRAAGVPRDRFVVATKCGRYREGFDFSAARVTRSVDESLARLGLDYVDILHC 120
SESVLGDCLRAAGVPRDRFVVATKCGRYREGFDFSAARVTRSVDESLARLGLDYVDILHC
Sbjct: 61 SESVLGDCLRAAGVPRDRFVVATKCGRYREGFDFSAARVTRSVDESLARLGLDYVDILHC 120
Query: 121 HDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVILSYC 180
HDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVILSYC
Sbjct: 121 HDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVILSYC 180
Query: 181 HYGINDTALVDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPAPKELKLACRAAADHC 240
HYGINDTALVDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPAPKELKLACRAAADHC
Sbjct: 181 HYGINDTALVDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPAPKELKLACRAAADHC 240
Query: 241 KKKGKNITKLAMQYSLMNNEISTVLVGMNSPEQVEENVAAAIELSTSGIDKELLHEVEAI 300
KKKGKNITKLAMQYSLMNNEISTVLVGMNSPEQVEENVAAAIELSTSGIDKELLHEVEAI
Sbjct: 241 KKKGKNITKLAMQYSLMNNEISTVLVGMNSPEQVEENVAAAIELSTSGIDKELLHEVEAI 300
Query: 301 LEPVKNMTWSSGIEQA 316
LEPVKNMTWSSGIEQA
Sbjct: 301 LEPVKNMTWSSGIEQA 316
>Os02g0817500 KCNAB voltage-gated K+ channel, beta subunit family protein
Length = 328
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 148/333 (44%), Gaps = 46/333 (13%)
Query: 1 MELRELGATGLRVSPVGFGASPLGHVFGD-VPXXXXXXXXXXXXXXGINFFDTSPYYGGT 59
M+ + LG +GLRVS + +GA FG+ + G+NFFD + Y
Sbjct: 1 MQYKNLGRSGLRVSQLSYGAWV---TFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANG 57
Query: 60 VSESVLGDCLRAAGVPRDRFVVATKCGRYREGFD---FSAARVTRSVDESLARLGLDYVD 116
+E ++G +R G R VV+TK +G + S + + SL RL +DYVD
Sbjct: 58 RAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVD 117
Query: 117 ILHCHDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYV------LDQVPP 170
+++CH D V ET+ + + + G A + G + T LD V P
Sbjct: 118 VVYCHR---PDATTPVEETVRAMNWVIDHGMAFYWGTSEWSAQQITEAWSVANRLDLVGP 174
Query: 171 GSVDVILSYCHYGINDTALV--DLLPYLKSKGVGVISASPLAMGLLT-----DNGPPEWH 223
I+ Y + V + LP + G+G+ + SPLA G+LT N P +
Sbjct: 175 -----IVEQPEYNLFSRHKVESEFLPLYSTYGLGLTTWSPLASGVLTGKYAKGNIPADSR 229
Query: 224 PAPKELK-LACRAAADHCKKK-----------GKNITKLAMQYSLMNNEISTVLVGMNSP 271
A + K LA R+ D +K G ++ +LA+ + N +S+V+ G
Sbjct: 230 FALENYKNLANRSLVDDTLRKVNGLKPIASELGVSLAQLAIAWCASNPNVSSVITGATKE 289
Query: 272 EQVEENVAA--AIELSTSGIDKELLHEVEAILE 302
Q+ EN+ A I L T E++ ++EA+++
Sbjct: 290 NQIVENMKALDVIPLLTP----EVVDKIEAVVQ 318
>Os10g0419100 Aldo/keto reductase family protein
Length = 373
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 137/318 (43%), Gaps = 39/318 (12%)
Query: 5 ELGATGLRVSPVGFGASPLGHVF-GDVPXXXXXXXXXXXXXXGINFFDTSPYYGGTVSES 63
+LG GL VS +GFG L V+ V G+ FFDTS YG +E
Sbjct: 40 KLGTQGLEVSKLGFGCMGLTGVYNAPVAEEDGVAVVRRAFEAGVTFFDTSDAYGPHTNEV 99
Query: 64 VLGDCLRAAGVPRDRFVVATKCGRYREGFDFSAARVTRSVD-------ESLARLGLDYVD 116
+LG L+ +PR++ VATK G GFD + V + D SL RL +DY+D
Sbjct: 100 LLGKALKQ--LPREKVQVATKFG--IAGFDANGMLVKGTPDYVRACCEASLERLAVDYID 155
Query: 117 ILHCHDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVI 176
+ + H I D + ET+ L+K+ E GK +F+G++ P +V +
Sbjct: 156 LYYQHRI---DQSVPIEETMGELKKLVEEGKVKFVGLSEASADTIRRAHAVYPITAVQME 212
Query: 177 LSYCHYGINDTALVDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPAPKELKLACRAA 236
S I + +++P + G+G++ SP+ G + P+ L R
Sbjct: 213 WSLWTRDIEE----EIIPLCRELGIGIVPYSPIGRGFFAGRAAVQSIPSESWLTRHPRYN 268
Query: 237 ADHCKKK--------------GKNITKLAMQYSLMNNEISTVLVGMNSPEQVEENVAAA- 281
++ +K G + +LA+ + L + + G + +++N+ A
Sbjct: 269 GENLEKNKVFYTRIEELATKYGCSPAQLALSWVLHQGDDVVPIPGTTKVKNLDDNIGAVK 328
Query: 282 IELSTSGIDKELLHEVEA 299
++LS KE L E+ A
Sbjct: 329 VKLS-----KEDLKEISA 341
>Os04g0337500 Aldo/keto reductase family protein
Length = 350
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 125/296 (42%), Gaps = 28/296 (9%)
Query: 5 ELGATGLRVSPVGFGASPLGHVFGD-VPXXXXXXXXXXXXXXGINFFDTSPYYGGTVSES 63
+LG+ G+ VS G G + F P G+ FFDTS YG +E
Sbjct: 15 KLGSQGMEVSAQGLGCMGMCPAFEPPKPEADMVALIRHAIAAGVTFFDTSDLYGPHTNEV 74
Query: 64 VLGDCLRAAGVPRDRFVVATKCGRY----REGFDFSAARVTRSVDESLARLGLDYVDILH 119
+LG L+ GV RDR +ATK G++ + G A V + + SL RLG+D +D+ +
Sbjct: 75 LLGKALQGGGV-RDRVELATKFGKFFAGGKPGIRGDPAYVRAACEGSLRRLGVDCIDLYY 133
Query: 120 CHDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVILSY 179
H + D + TI L+K+ E GK R+IG+ S P +V + S
Sbjct: 134 QHRV---DKKVPIEVTIGELKKLVEEGKIRYIGLCEASASTIRRAHAVHPITAVQLEWSL 190
Query: 180 CHYGINDTALVDLLPYLKSKGVGVISASPLAMGL------LTDNGP--------PEWHPA 225
+ + D++P + G+G+++ SPL G L D+ P P + P
Sbjct: 191 WSRDVEE----DIVPTCRELGIGIVAYSPLGKGFFSSGAKLVDSLPDHDFRKLIPRFQPG 246
Query: 226 PKELKLAC-RAAADHCKKKGKNITKLAMQYSLMNNEISTVLVGMNSPEQVEENVAA 280
E + +KG ++LA+ + + G E +NVAA
Sbjct: 247 NIEKNAEIFERVNEMAARKGCTPSQLALAWIHHQGRDVCPIPGTTKIENFNQNVAA 302
>Os01g0618100 Similar to IN2-2 protein
Length = 344
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 17/245 (6%)
Query: 5 ELGATGLRVSPVGFGASPLGHVFGD-VPXXXXXXXXXXXXXXGINFFDTSPYYGGTVSES 63
+LG GL VS +GFG L + + G+ FFDTS YG +E
Sbjct: 14 KLGTRGLEVSKLGFGCMGLTGAYNSPLDDDAGAAVIAHAFRRGVTFFDTSDVYGPLANEI 73
Query: 64 VLGDCLRAAGVPRDRFVVATKCGRYREGFDFSAARVTR------SVDESLARLGLDYVDI 117
+LG L+ +PR++ VATK G R G D A R + SL RLG+DY+D+
Sbjct: 74 LLGKALKQ--LPREQVQVATKFG-IRRGADGVRAVCGRPEYVRACCEASLGRLGVDYIDL 130
Query: 118 LHCHDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVIL 177
+ H ++ T + +TI L+K+ E GK R+IG++ P +V +
Sbjct: 131 YYQHRVDTT---IPIEDTIGELKKLVEEGKVRYIGLSEASPDTIRRAHAVHPITAVQMEW 187
Query: 178 SYCHYGINDTALVDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPAPKELKLACRAAA 237
S I +++P + G+G++ SP+A G G E A L+ R +A
Sbjct: 188 SLWARDIEP----EIVPLCRELGIGIVPYSPIARGFFGGRGVTEQLSAESNLQGHPRFSA 243
Query: 238 DHCKK 242
++ +K
Sbjct: 244 ENLEK 248
>Os04g0338000 Similar to IN2-2 protein
Length = 351
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 14/216 (6%)
Query: 5 ELGATGLRVSPVGFGASPLGHVFGD-VPXXXXXXXXXXXXXXGINFFDTSPYYGGTVSES 63
+LG+ GL VS G G + +G P G+ DTS YG +E
Sbjct: 15 KLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMVALIHHAVAAGVTLLDTSDIYGPHTNEL 74
Query: 64 VLGDCLRAAGVPRDRFVVATKCG-RYREG---FDFSAARVTRSVDESLARLGLDYVDILH 119
+LG L+ G RD+ +ATK G + +G A V + + SL RLG+D +D+ +
Sbjct: 75 LLGKALQ--GGVRDKVELATKFGIAFEDGKRDVRGDPAYVRAACEGSLRRLGVDSIDLYY 132
Query: 120 CHDIEFTDLDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVILSY 179
H + D + TI L+K+ E GK ++IG++ S P +V + S
Sbjct: 133 QHRV---DKKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSL 189
Query: 180 CHYGINDTALVDLLPYLKSKGVGVISASPLAMGLLT 215
+ + D++P + G+G+++ SPL G +
Sbjct: 190 WSRDVEE----DIIPTCRELGIGIVAYSPLGRGFFS 221
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,508,781
Number of extensions: 428049
Number of successful extensions: 987
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 8
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)