Os04g0338000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to IN2-2 protein.
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Os04g0338000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to IN2-2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.97 | 0.367 | 12.8 | -1.07 | 0.493 | 1.59 | 0.169 | -7.63 | 0.796 | 4.21 | 31.82 | 1101 | -- | -- |
| 62.87 | 0.369 | 12.7 | 0.0377 | 0.475 | 0.76 | 0.29 | -- | 0.787 | 4.24 | 31.8 | 1086 | -- | -- |
| 61.03 | 0.364 | 12.8 | -1.07 | 0.494 | 1.6 | -- | -7.65 | 0.794 | 4.18 | 31.99 | 1096 | -- | -- |
| 62.76 | 0.369 | 12.7 | 0.0846 | 0.484 | 0.744 | -- | -- | 0.795 | 4.16 | 31.9 | 1080 | -- | -- |
| 73.98 | 0.401 | 12.8 | -1.03 | -- | 1.62 | -- | -7.31 | 0.816 | -- | 31.78 | 1116 | -- | -- |
| 88.06 | 0.44 | 12.7 | 0.261 | 0.563 | -- | 0.284 | -- | 0.668 | 3.56 | -- | -- | -- | -- |
| 88.31 | 0.44 | 12.7 | 0.256 | 0.565 | -- | -- | -- | 0.667 | 3.55 | -- | -- | -- | -- |
| 75.23 | 0.404 | 12.7 | 0.0833 | -- | 0.797 | -- | -- | 0.815 | -- | 31.73 | 1106 | -- | -- |
| 62.94 | 0.37 | 12.7 | -- | 0.484 | 0.753 | -- | -- | 0.788 | 4.17 | 31.8 | 1086 | -- | -- |
| 106.1 | 0.481 | 12.7 | 0.28 | -- | -- | -- | -- | 0.682 | -- | -- | -- | -- | -- |
| 90.04 | 0.444 | 12.7 | -- | 0.57 | -- | -- | -- | 0.638 | 3.55 | -- | -- | -- | -- |
| 75.41 | 0.404 | 12.7 | -- | -- | 0.81 | -- | -- | 0.813 | -- | 31.7 | 1111 | -- | -- |
| 108.16 | 0.485 | 12.7 | -- | -- | -- | -- | -- | 0.651 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.58 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 12 | 59.17 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 19 | 59.99 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 20 | 60.00 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 26 | 60.30 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 28 | 60.40 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 34 | 60.82 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 36 | 60.88 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 37 | 60.89 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 44 | 60.98 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 46 | 61.02 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 67 | 61.40 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 74 | 61.55 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 118 | 62.01 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 153 | 62.25 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 185 | 62.43 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 237 | 62.53 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 249 | 62.56 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 260 | 62.60 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 272 | 62.65 | humidity | 50 | 1440 | < th | dose independent | sin | 11 | NA |
| 303 | 62.75 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 308 | 62.76 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 351 | 62.81 | humidity | 50 | 1440 | > th | dose independent | sin | 11 | NA |
| 411 | 62.87 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 442 | 62.98 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 466 | 63.02 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 508 | 63.17 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 512 | 63.21 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 672 | 63.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 676 | 63.49 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 712 | 63.55 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 717 | 63.56 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 746 | 63.63 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 752 | 63.67 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 779 | 63.73 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 784 | 63.74 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 803 | 63.76 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 804 | 63.76 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 805 | 63.77 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 813 | 63.79 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 821 | 63.83 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 824 | 63.83 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 831 | 63.84 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 856 | 63.88 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 20 |
| 880 | 63.92 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 907 | 63.95 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |