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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0337500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aldo/keto reductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.39 (0.0464) R2 : 0.633
β1 : -2.37 (0.172) R2dD : 0.181 R2D : 0.0971
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.15 (0.164) R2dE : 0.53 R2E : 0.447
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.0998) R2dN8 : 0.00132 R2N8 : 0.0105
σ : 0.866
deviance : 345.74
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C
peak time of C : --
E
wheather : temperature
threshold : 16.04
memory length : 824
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.8
open length of G : 11.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
315.73 0.835 5.27 -1.95 2.19 5.96 3.09 7.42 0.257 10.2 8.601 756 11.7 9.65
344.19 0.864 5.41 -2.3 0.0341 3.74 0.312 -- 0.0335 20.2 16.93 792 12.1 8.99
321.97 0.836 5.32 -2.2 2.65 6.95 -- 4 0.0935 10.7 6.051 813 11 10.4
335.3 0.853 5.33 -2.49 3.88 7.91 -- -- 0.103 11.1 0.528 779 11.7 9.88
323.01 0.837 5.34 -1.97 -- 4.02 -- 4.72 0.239 -- 15.48 808 10.8 11.7
458.83 1 5.39 -1.69 2.35 -- 2.8 -- 0.421 22.9 -- -- -- --
491.74 1.04 5.39 -1.81 2.34 -- -- -- 0.413 22.9 -- -- -- --
345.74 0.866 5.39 -2.37 -- 4.15 -- -- 0.109 -- 16.04 824 10.8 11.5
479.06 1.02 5.25 -- 4.39 7.97 -- -- 0.351 11 -6.597 743 12 9.6
830.7 1.35 5.33 -1.76 -- -- -- -- 0.428 -- -- -- -- --
577.62 1.12 5.35 -- 2.32 -- -- -- 0.614 22.8 -- -- -- --
492.55 1.03 5.3 -- -- 3.67 -- -- 0.454 -- 15.51 744 12 9.92
912.05 1.41 5.29 -- -- -- -- -- 0.623 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 319.62 temperature 10 720 > th dose dependent rect. 12 10
12 324.87 temperature 10 720 > th dose dependent rect. 10 14
47 330.99 temperature 15 720 > th dose dependent sin 21 NA
73 333.39 temperature 30 720 < th dose dependent rect. 11 9
87 334.26 temperature 30 720 < th dose dependent rect. 9 12
102 334.80 temperature 20 270 > th dose dependent rect. 12 19
111 335.26 temperature 10 720 > th dose dependent rect. 4 19
120 335.63 temperature 20 720 > th dose dependent rect. 12 3
131 336.01 temperature 20 720 > th dose dependent rect. 4 18
163 336.82 temperature 30 720 < th dose dependent rect. 13 6
182 337.31 temperature 30 720 < th dose dependent sin 21 NA
360 342.20 temperature 25 720 > th dose dependent rect. 17 23
391 342.75 temperature 15 1440 > th dose dependent rect. 13 1
488 343.83 temperature 25 720 > th dose dependent no NA NA
501 344.16 temperature 25 270 > th dose independent rect. 12 10
507 344.34 temperature 30 720 < th dose independent rect. 15 12
625 346.23 temperature 30 720 < th dose independent rect. 15 4
691 347.32 temperature 25 720 > th dose dependent rect. 14 23
745 347.94 temperature 25 720 > th dose independent rect. 6 16