Os12g0482700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to L-galactose dehydrogenase.
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Os12g0482700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to L-galactose dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.14 | 0.355 | 9.9 | -1.49 | 0.658 | -0.138 | -0.617 | 5.74 | -0.575 | 20.2 | 30 | 1135 | -- | -- |
| 60.76 | 0.363 | 10 | -2.51 | 0.665 | 0.591 | -0.478 | -- | -0.636 | 20.3 | 35.34 | 4668 | -- | -- |
| 58.08 | 0.355 | 9.9 | -1.49 | 0.666 | -0.139 | -- | 5.67 | -0.593 | 20.3 | 30.2 | 1165 | -- | -- |
| 61.3 | 0.365 | 10 | -2.47 | 0.656 | 0.543 | -- | -- | -0.615 | 20.3 | 33.07 | 2615 | -- | -- |
| 78.03 | 0.411 | 9.9 | -1.59 | -- | -0.0217 | -- | 7.37 | -0.587 | -- | 30.2 | 847 | -- | -- |
| 71.28 | 0.396 | 10 | -2.39 | 0.685 | -- | -0.383 | -- | -0.717 | 20.6 | -- | -- | -- | -- |
| 71.74 | 0.397 | 10 | -2.38 | 0.684 | -- | -- | -- | -0.717 | 20.7 | -- | -- | -- | -- |
| 75.16 | 0.404 | 10 | -2.55 | -- | 0.898 | -- | -- | -0.793 | -- | 28.7 | 741 | -- | -- |
| 220.2 | 0.691 | 9.98 | -- | 0.687 | 0.155 | -- | -- | -0.424 | 20.4 | 34.7 | 5541 | -- | -- |
| 98.24 | 0.463 | 10 | -2.38 | -- | -- | -- | -- | -0.723 | -- | -- | -- | -- | -- |
| 221.14 | 0.696 | 9.99 | -- | 0.692 | -- | -- | -- | -0.452 | 20.5 | -- | -- | -- | -- |
| 156.48 | 0.583 | 10 | -- | -- | -1.25 | -- | -- | -0.594 | -- | 35.16 | 47520 | -- | -- |
| 247.91 | 0.735 | 9.97 | -- | -- | -- | -- | -- | -0.459 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 4 | 58.24 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 5 | 58.29 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 7 | 58.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 10 | 58.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 13 | 58.33 | wind | 7 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 17 | 58.34 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 32 | 58.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 36 | 58.36 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 129 | 58.38 | wind | 7 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 134 | 58.39 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 137 | 58.40 | wind | 7 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 149 | 58.43 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 155 | 58.45 | wind | 9 | 43200 | < th | dose dependent | sin | 5 | NA |
| 160 | 58.46 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 161 | 58.46 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 182 | 58.47 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 188 | 58.48 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 189 | 58.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 197 | 58.49 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 198 | 58.49 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 199 | 58.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 245 | 58.53 | wind | 1 | 43200 | > th | dose dependent | sin | 5 | NA |
| 268 | 58.54 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 273 | 58.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 284 | 58.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 339 | 58.56 | temperature | 30 | 1440 | > th | dose dependent | sin | 16 | NA |
| 344 | 58.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 368 | 58.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 377 | 58.58 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 378 | 58.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 379 | 58.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 398 | 58.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 399 | 58.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 402 | 58.58 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 446 | 58.60 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 458 | 58.61 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 475 | 58.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 480 | 58.62 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 481 | 58.63 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 482 | 58.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 483 | 58.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 525 | 58.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 533 | 58.65 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 535 | 58.66 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 586 | 58.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 605 | 58.67 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 721 | 58.68 | temperature | 30 | 1440 | < th | dose independent | sin | 1 | NA |
| 799 | 58.70 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 804 | 58.70 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 839 | 58.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 857 | 58.72 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 886 | 58.74 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 906 | 58.76 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 939 | 58.76 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |