BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0438600 Os12g0438600|AK101523
(707 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0438600 Similar to Chloride channel protein CLC-a (AtC... 1233 0.0
AK066027 620 e-177
Os02g0558100 Similar to C1C-Nt1 protein 590 e-168
Os04g0644800 Cl- channel, voltage gated family protein 231 1e-60
AK110503 175 1e-43
Os03g0695700 Similar to Chloride channel protein CLC-d (AtC... 140 3e-33
Os01g0876100 Cl- channel, voltage gated family protein 131 2e-30
>Os12g0438600 Similar to Chloride channel protein CLC-a (AtCLC-a)
Length = 707
Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/707 (89%), Positives = 634/707 (89%)
Query: 1 SVQARLEEAIERGGAAVHLPQVGHGVXXXXXXXXXXXXXXXXXXEHLRPQDAPHGAARPQ 60
SVQARLEEAIERGGAAVHLPQVGHGV EHLRPQDAPHGAARPQ
Sbjct: 1 SVQARLEEAIERGGAAVHLPQVGHGVPRRPPHRRHRVAHQPRHREHLRPQDAPHGAARPQ 60
Query: 61 EKYWAGFLYFAGVNFGLTFIAAMLCVVFAPTAAGPGIPEIKAYLNGVDTPNMFGAPQLIV 120
EKYWAGFLYFAGVNFGLTFIAAMLCVVFAPTAAGPGIPEIKAYLNGVDTPNMFGAPQLIV
Sbjct: 61 EKYWAGFLYFAGVNFGLTFIAAMLCVVFAPTAAGPGIPEIKAYLNGVDTPNMFGAPQLIV 120
Query: 121 KIIGSICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRLRWLRYFDNDRDRRDLI 180
KIIGSICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRLRWLRYFDNDRDRRDLI
Sbjct: 121 KIIGSICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRLRWLRYFDNDRDRRDLI 180
Query: 181 TCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTATVVVVLRGFIEVCRNGR 240
TCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTATVVVVLRGFIEVCRNGR
Sbjct: 181 TCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTATVVVVLRGFIEVCRNGR 240
Query: 241 CGLFGEGGLILFDVGDVAVRYHAGDXXXXXXXXXXXXXXXALYNHVLHKVLRVYNLINEK 300
CGLFGEGGLILFDVGDVAVRYHAGD ALYNHVLHKVLRVYNLINEK
Sbjct: 241 CGLFGEGGLILFDVGDVAVRYHAGDLLPVTIVGVLGGVLGALYNHVLHKVLRVYNLINEK 300
Query: 301 GRXXXXXXXXXXXXXXXXXXYVTPFAVPCTPCDPAFGGACPTLGKSGNFKRFNCPEGHYN 360
GR YVTPFAVPCTPCDPAFGGACPTLGKSGNFKRFNCPEGHYN
Sbjct: 301 GRAAKLALALAVCALTSALLYVTPFAVPCTPCDPAFGGACPTLGKSGNFKRFNCPEGHYN 360
Query: 361 DLATLLHATNVDATRNIFSTGTAGEFRLDSLLIFFAVYCVLGLFTFGIAVPSGLFLPIIL 420
DLATLLHATNVDATRNIFSTGTAGEFRLDSLLIFFAVYCVLGLFTFGIAVPSGLFLPIIL
Sbjct: 361 DLATLLHATNVDATRNIFSTGTAGEFRLDSLLIFFAVYCVLGLFTFGIAVPSGLFLPIIL 420
Query: 421 MGSAYGRVTALVLSRFARIDHGLYAVLGAAALMSGSMRMTVSLVVIFXXXXXXXXXXPIT 480
MGSAYGRVTALVLSRFARIDHGLYAVLGAAALMSGSMRMTVSLVVIF PIT
Sbjct: 421 MGSAYGRVTALVLSRFARIDHGLYAVLGAAALMSGSMRMTVSLVVIFLELTNNLLLLPIT 480
Query: 481 MFVLLIAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAAAKPRAVALQVV 540
MFVLLIAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAAAKPRAVALQVV
Sbjct: 481 MFVLLIAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAAAKPRAVALQVV 540
Query: 541 ERVSTVVEALRATRHNGFPVLDRPRPGVSELHGLVLRSHLVAALRKRWFLPXXXXXXXXX 600
ERVSTVVEALRATRHNGFPVLDRPRPGVSELHGLVLRSHLVAALRKRWFLP
Sbjct: 541 ERVSTVVEALRATRHNGFPVLDRPRPGVSELHGLVLRSHLVAALRKRWFLPERRRTEEWE 600
Query: 601 XXXMFSSAELADKCGGVDELEISPEEMGMYVDLHPLTNTTPYTVVETMSVAKAVVLFRSV 660
MFSSAELADKCGGVDELEISPEEMGMYVDLHPLTNTTPYTVVETMSVAKAVVLFRSV
Sbjct: 601 AREMFSSAELADKCGGVDELEISPEEMGMYVDLHPLTNTTPYTVVETMSVAKAVVLFRSV 660
Query: 661 ALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAFPHLASKRKTH 707
ALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAFPHLASKRKTH
Sbjct: 661 ALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAFPHLASKRKTH 707
>AK066027
Length = 773
Score = 620 bits (1598), Expect = e-177, Method: Compositional matrix adjust.
Identities = 332/654 (50%), Positives = 431/654 (65%), Gaps = 14/654 (2%)
Query: 60 QEKYWAGFLYFAGVNFGLTFIAAMLCVVFAPTAAGPGIPEIKAYLNGVDTPNMFGAPQLI 119
+++Y+ FL + G N L AA +C AP AAG GIPE+KAYLNGVD ++ L
Sbjct: 128 KQRYFTAFLAYGGCNLVLATTAAAICAYIAPAAAGSGIPEVKAYLNGVDAYSILAPSTLF 187
Query: 120 VKIIGSICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRLRWLRYFDNDRDRRDL 179
VKI GSI VS+G LGKEGP+VH GAC+ANLL QGGS ++ L WLRYF NDRDRRDL
Sbjct: 188 VKIFGSILGVSAGFVLGKEGPMVHTGACIANLLGQGGSRKYHLTWNWLRYFKNDRDRRDL 247
Query: 180 ITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTATVVVVLRGFIEVCRNG 239
ITCG+++GV AAFRAPVGGVLFALEE A+WWRSALLWRTFF+TA V VVLRG IE CR+G
Sbjct: 248 ITCGSAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGLIEFCRSG 307
Query: 240 RCGLFGEGGLILFDVGDVAVRYHAGDXXXXXXXXXXXXXXXALYNHVLHKVLRVYNLINE 299
+CGLFG+GGLI+FD+ Y A D L+N +L ++LR Y++INE
Sbjct: 308 KCGLFGQGGLIMFDLSSTIPTYTAQDVVAIIVLGIIGGVFGGLFNFLLDRILRAYSIINE 367
Query: 300 KGRXXXXXXXXXXXXXXXXXXYVTPFAVPCTPCDPAFGGACPTLGKSGNFKRFNCPEGHY 359
+G Y P+ PCTPC CPT+G+SGNFK F CP GHY
Sbjct: 368 RGPPFKILLTMIISIITSACSYGLPWLAPCTPCPADAAEECPTIGRSGNFKNFQCPPGHY 427
Query: 360 NDLATLLHATNVDATRNIFSTGTAGEFRLDSLLIFF-AVYCVLGLFTFGIAVPSGLFLPI 418
N LA+L TN DA RN+FS+GT EF + +L +FF A+YC LGL T+GIAVPSGLF+P+
Sbjct: 428 NGLASLFFNTNDDAIRNLFSSGTEKEFHMSTLFVFFTAIYC-LGLVTYGIAVPSGLFIPV 486
Query: 419 ILMGSAYGRVTALVLSRFARIDHGLYAVLGAAALMSGSMRMTVSLVVIFXXXXXXXXXXP 478
IL G+ YGR+ +L + +D GL+A+LGAA+ + G+MRMTVS+ VI P
Sbjct: 487 ILAGATYGRIVGTLLGPISDLDPGLFALLGAASFLGGTMRMTVSVCVILLELTNDLHMLP 546
Query: 479 ITMFVLLIAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAAAKPRAVALQ 538
+ M VLLI+KT+ D+FN +Y+ I+ +KGLPF+EA EP+M++L G++ + +
Sbjct: 547 LVMLVLLISKTIADSFNKGVYDQIVVMKGLPFMEAHAEPFMRNLVAGDVVSGP--LITFS 604
Query: 539 VVERVSTVVEALRATRHNGFPVLDRPRPGVS-ELHGLVLRSHLVAALRKRWFLPXXXXXX 597
VE+V +V ALR T HNGFPV+D P + EL GLVLRSHL+ L+ R F+
Sbjct: 605 GVEKVGNIVHALRITGHNGFPVVDEPPVSEAPELVGLVLRSHLLVLLKGRSFMKEKVKTS 664
Query: 598 XXXXXXMFSSAELADKCGG----VDELEISPEEMGMYVDLHPLTNTTPYTVVETMSVAKA 653
F + + A G +++L+++ EE+ MYVDLHP+TNT+PYTVVETMS+AKA
Sbjct: 665 GSFVLRRFGAFDFAKPGSGKGLKIEDLDLTDEELDMYVDLHPITNTSPYTVVETMSLAKA 724
Query: 654 VVLFRSVALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAFPHLASKRKTH 707
VLFR++ LRH+L++PK P PIVGILTR D + +I G FP+L K+H
Sbjct: 725 AVLFRALGLRHLLVVPK--TPGRPPIVGILTRHDFMHEHIHGLFPNLG---KSH 773
>Os02g0558100 Similar to C1C-Nt1 protein
Length = 659
Score = 590 bits (1521), Expect = e-168, Method: Compositional matrix adjust.
Identities = 328/654 (50%), Positives = 420/654 (64%), Gaps = 11/654 (1%)
Query: 57 ARPQEKYWAGFLYFAGVNFGLTFIAAMLCVVFAPTAAGPGIPEIKAYLNGVDTPNMFGAP 116
A+ + +Y F + G N L AA +C AP AAG GIPE+KAYLNGVD ++
Sbjct: 3 AKGKCRYLTAFFAYGGCNLVLAAAAAAICAYIAPAAAGSGIPEVKAYLNGVDAYSILAPS 62
Query: 117 QLIVKIIGSICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRLRWLRYFDNDRDR 176
L VKI GSI VS+G LGKEGP+VH GAC+ANLL QGGS ++RL WLRYF NDRDR
Sbjct: 63 TLFVKIFGSILGVSAGFVLGKEGPMVHTGACIANLLGQGGSRKYRLTCNWLRYFKNDRDR 122
Query: 177 RDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTATVVVVLRGFIEVC 236
RDLITCG+++GV AAFRAPVGGVLFALEE A+WWRSALLWR FF+TA V VVLR IE C
Sbjct: 123 RDLITCGSAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRAFFTTAVVAVVLRSLIEFC 182
Query: 237 RNGRCGLFGEGGLILFDVGDVAVRYHAGDXXXXXXXXXXXXXXXALYNHVLHKVLRVYNL 296
R+G+CGLFG+GGLI+FD+ Y D L+N +L KVLRVY++
Sbjct: 183 RSGKCGLFGQGGLIMFDLSSTVATYSTPDLIAIIILGIIGGIFGGLFNFLLDKVLRVYSI 242
Query: 297 INEKGRXXXXXXXXXXXXXXXXXXYVTPFAVPCTPCDPAFGGACPTLGKSGNFKRFNCPE 356
INE+G Y P+ CTPC CPT+G+SGNFK F CP
Sbjct: 243 INERGAPFKILLTITISIITSMCSYGLPWLAACTPCPVDAVEQCPTIGRSGNFKNFQCPP 302
Query: 357 GHYNDLATLLHATNVDATRNIFSTGTAGEFRLDSLLIFF-AVYCVLGLFTFGIAVPSGLF 415
GHYNDLA+L TN DA RN+FS GT EF + +L IFF AVYC LG+ T+G+AVPSGLF
Sbjct: 303 GHYNDLASLFFNTNDDAIRNLFSNGTESEFHMSTLFIFFTAVYC-LGILTYGVAVPSGLF 361
Query: 416 LPIILMGSAYGRVTALVLSRFARIDHGLYAVLGAAALMSGSMRMTVSLVVIFXXXXXXXX 475
+P+IL G+ YGR+ +L + +D GL+A+LGAA+ + G+MRMTVS+ VI
Sbjct: 362 IPVILAGATYGRIVGTLLGSISDLDPGLFALLGAASFLGGTMRMTVSVCVILLELTNDLA 421
Query: 476 XXPITMFVLLIAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAAAKPRAV 535
P+ M VLLI+KT+ D FN +Y+ I+ +KGLP++EA EP+M+ L G++ + +
Sbjct: 422 MLPLVMLVLLISKTIADNFNKGVYDQIVVMKGLPYMEAHAEPYMRHLVAGDVVSGP--LI 479
Query: 536 ALQVVERVSTVVEALRATRHNGFPVLDR-PRPGVSELHGLVLRSHLVAALRKRWFLPXXX 594
VE+V +V ALR T HNGFPV+D P EL GLV RSHL+ L + F+
Sbjct: 480 TFSGVEKVGNIVHALRFTGHNGFPVVDEPPLTEAPELVGLVTRSHLLVLLNGKMFMKDQL 539
Query: 595 XXXXXXXXXMFSSAELADKCGG----VDELEISPEEMGMYVDLHPLTNTTPYTVVETMSV 650
F + + A G + +L+ + EEM MYVDLHP+TNT+PYTVVETMS+
Sbjct: 540 KTSGSFVLQRFGAFDFAKPGSGKGLKIQDLDFTDEEMEMYVDLHPVTNTSPYTVVETMSL 599
Query: 651 AKAVVLFRSVALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAFPHLASKR 704
AKA +LFR++ LRH+L++PK P+ PIVGILTR D + +I G FP+L +
Sbjct: 600 AKAAILFRALGLRHLLVVPK--TPDRPPIVGILTRHDFVEEHIHGLFPNLNPHK 651
>Os04g0644800 Cl- channel, voltage gated family protein
Length = 201
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/195 (58%), Positives = 142/195 (72%)
Query: 105 NGVDTPNMFGAPQLIVKIIGSICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRL 164
NGVD P++F L+VKI+G I AVSS L +GK GPLVH GAC+A++L QGGS ++ L
Sbjct: 1 NGVDAPDIFSLKTLVVKIVGCIAAVSSSLHVGKAGPLVHTGACIASILGQGGSSKYHLTC 60
Query: 165 RWLRYFDNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAT 224
+WLRYF NDRDRRDL+TCGA +G+ AAFRAPVGGVLFALE V++WWRSALLWR FF+TA
Sbjct: 61 KWLRYFKNDRDRRDLVTCGAGAGIAAAFRAPVGGVLFALEAVSSWWRSALLWRAFFTTAM 120
Query: 225 VVVVLRGFIEVCRNGRCGLFGEGGLILFDVGDVAVRYHAGDXXXXXXXXXXXXXXXALYN 284
V VVLR I+ C++ +CGLFG+GGLI+FDV + YH D +L+N
Sbjct: 121 VAVVLRALIDFCKSDKCGLFGKGGLIMFDVTSDYITYHLVDLPPVITLGVLGGVLGSLHN 180
Query: 285 HVLHKVLRVYNLINE 299
L KVLR+YN INE
Sbjct: 181 FFLDKVLRLYNFINE 195
>AK110503
Length = 800
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 255/591 (43%), Gaps = 47/591 (7%)
Query: 126 ICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRLRW-LRYFDNDRDRRDLITCGA 184
+ AV+S L G++ PL+HIGA + +SQ +G ++ L F N+RDRRD I+ G
Sbjct: 2 VAAVTSSLMAGQD-PLIHIGAVIGGWVSQARTGFLKIDAALKLHVFRNERDRRDFISIGT 60
Query: 185 SSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTATVVVVLRGFIEVCRNGRCGLF 244
+ G+ + F P GG F +EEV ++W + FF+ ++ G+ G+F
Sbjct: 61 ACGMASIFNGPFGGTFFVVEEVGSFWNWETTAQMFFACVMSTATANFWVSGITYGKWGVF 120
Query: 245 GEGGLILFDVGDVAVRYHAGDXXXXXXXXXXXXXXXALYNHVLH-KVLRVYNLINEKGRX 303
+++F++G Y +L + R +++ R
Sbjct: 121 DPRAIVVFNIGTSTTFYMYELVLFAIVGATGGLLGGCFVQGMLKIQTWRRKYIVH---RW 177
Query: 304 XXXXXXXXXXXXXXXXXYVTPFAVPCTPCDPAFGGACPTLGKSGNFKRFNCPEGHYNDLA 363
+V P+ C P T G F R C G YN+ A
Sbjct: 178 QKFTEMVLILTSTCLTLFVLPYVFACAPTYHTPLETTATFGMYNPF-RHECNSGEYNEFA 236
Query: 364 TLLHATNVDATRNIFSTGTAGEFRLDSLLIFFAVYCVLGLFTFGI-------AVPSGLFL 416
TL ++ +++ S + + AV GL+ FG V +GL
Sbjct: 237 TLAMQGQINTIKHLVSRDVPDMYSI-------AVTFTYGLWAFGFLLITSGATVAAGLVT 289
Query: 417 PIILMGSAYGRVTA-LVLSRF--ARIDHGLYAVLGAAALMSGSMRMTVSLVVIFXXXXXX 473
PI L+G+ GR+ + L F + ID G+YAV+GA A+MSG MRM V +V
Sbjct: 290 PIWLVGAVMGRLWGEIFLWMFPGSGIDPGVYAVVGAGAMMSGVMRMIVCVVAFMIEVTSD 349
Query: 474 XXXXPITMFVLLIAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAA---- 529
+ L+++++ + F S++ + K +PFL PEP + + ++ A
Sbjct: 350 LQFVLPVIVAALVSRSIANRFGQSMFNTFIAFKNIPFLP--PEPVTSNALLNKMRAYDIM 407
Query: 530 AKPRAVALQVVERVSTVVEALRATRHNGFPVLDRPRPGVSELHGLVLRSHLVAALR-KRW 588
++P VAL V RV+ + + T H GFPV + G EL GL+ R L+ L+ K W
Sbjct: 408 SRP-VVALPVHCRVADALRVCQKTTHQGFPVTRGSKRG-GELTGLISRKFLLILLKHKIW 465
Query: 589 FLPXXXXXXXXXXXXMFSSAELADKCGGVDEL--EISPEEMGMYVDLHPLTNTTPYTVVE 646
P + K VDE+ E++ ++ ++DL N P V E
Sbjct: 466 RDPTLYTGRDYHFM-------MQKKILSVDEVKAELTDDDREQWLDLRAFMNRAPTRVHE 518
Query: 647 TMSVAKAVVLFRSVALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAF 697
+ A +FR + LRH+ ++ + VGI+TR++L+ ++ AF
Sbjct: 519 NTNAALTYRIFRLLGLRHLPVI-----NHQNKCVGIVTRKNLLEPILVRAF 564
>Os03g0695700 Similar to Chloride channel protein CLC-d (AtCLC-d)
Length = 269
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 125/208 (60%), Gaps = 10/208 (4%)
Query: 486 IAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAAAKPRAVALQVVERVST 545
I+K VGD FN +YE+ L+G+P L+++P+ M++++ + A + V+L V R+
Sbjct: 24 ISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNMSAKD-ACKNQKVVSLPRVSRIVD 82
Query: 546 VVEALRATRHNGFPVLDRPRPGVSELHGLVLRSHLVAALRKRWFLPXXXXXXXXXXXXMF 605
++ LR+ +HNGFPV+DR + G S + GL+LRSHL+ L+ +
Sbjct: 83 IISVLRSNKHNGFPVVDRGQNGESLVIGLILRSHLLVLLQSKVDFQNSPFPCGPGILNRH 142
Query: 606 SSAEL----ADKCGGVDELEISPEEMGMYVDLHPLTNTTPYTVVETMSVAKAVVLFRSVA 661
++++ + K +D++ ++ +E+G+Y+DL P N +PY V E MS+AK LFR +
Sbjct: 143 NTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLNPSPYIVPEDMSLAKVYNLFRQLG 202
Query: 662 LRHMLIMPKFQGPEISPIVGILTRQDLI 689
LRH+ ++P+ S +VG++TRQDL+
Sbjct: 203 LRHIFVVPR-----PSRVVGLITRQDLL 225
>Os01g0876100 Cl- channel, voltage gated family protein
Length = 93
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 73/92 (79%)
Query: 118 LIVKIIGSICAVSSGLDLGKEGPLVHIGACLANLLSQGGSGRHRLRLRWLRYFDNDRDRR 177
L ++I+GSI VS+G LGKEGP+VH GAC+A+ L QGGS ++ WLRYF ND DRR
Sbjct: 2 LYLQIVGSIFGVSAGFVLGKEGPMVHTGACVASFLGQGGSRKYGFTWNWLRYFKNDLDRR 61
Query: 178 DLITCGASSGVCAAFRAPVGGVLFALEEVATW 209
DLITCGA++GV AAFRAPVGGVLFALEE +W
Sbjct: 62 DLITCGAAAGVTAAFRAPVGGVLFALEEATSW 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,363,232
Number of extensions: 893802
Number of successful extensions: 2335
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2311
Number of HSP's successfully gapped: 8
Length of query: 707
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 599
Effective length of database: 11,396,689
Effective search space: 6826616711
Effective search space used: 6826616711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 160 (66.2 bits)