Os02g0558100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to C1C-Nt1 protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0558100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to C1C-Nt1 protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.54 | 0.295 | 10.1 | 0.81 | 1.68 | -0.416 | -0.995 | 6.33 | 0.151 | 7.06 | 29.25 | 1430 | -- | -- |
| 42.9 | 0.305 | 10.3 | -0.329 | 1.72 | 0.308 | -0.576 | -- | 0.147 | 6.88 | 31.67 | 3019 | -- | -- |
| 42.1 | 0.302 | 10.1 | 0.793 | 1.68 | -0.417 | -- | 6.4 | 0.16 | 7.1 | 29.16 | 1453 | -- | -- |
| 43.49 | 0.307 | 10.3 | -0.454 | 1.7 | 0.407 | -- | -- | 0.111 | 7.12 | 30.3 | 3837 | -- | -- |
| 190.35 | 0.643 | 10.2 | 1.01 | -- | -0.431 | -- | 6.8 | 0.246 | -- | 28.8 | 1419 | -- | -- |
| 46.57 | 0.32 | 10.3 | -0.34 | 1.71 | -- | -0.968 | -- | 0.0391 | 6.99 | -- | -- | -- | -- |
| 48.99 | 0.328 | 10.3 | -0.357 | 1.7 | -- | -- | -- | 0.0418 | 7.03 | -- | -- | -- | -- |
| 193.23 | 0.647 | 10.3 | -0.45 | -- | 0.397 | -- | -- | 0.132 | -- | 30.1 | 5731 | -- | -- |
| 48.66 | 0.325 | 10.3 | -- | 1.7 | 0.329 | -- | -- | 0.145 | 7.11 | 30.9 | 3890 | -- | -- |
| 201.97 | 0.664 | 10.3 | -0.323 | -- | -- | -- | -- | 0.0729 | -- | -- | -- | -- | -- |
| 52.36 | 0.338 | 10.3 | -- | 1.7 | -- | -- | -- | 0.0816 | 7.04 | -- | -- | -- | -- |
| 195.39 | 0.651 | 10.4 | -- | -- | 0.342 | -- | -- | 0.0552 | -- | 34 | 7059 | -- | -- |
| 204.73 | 0.668 | 10.3 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.83 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 2 | 37.87 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 3 | 38.10 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 5 | 38.33 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 21 | 39.27 | temperature | 30.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 24 | 39.38 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 26 | 39.39 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 29 | 39.40 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 32 | 39.41 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 34 | 39.42 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 39 | 39.43 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 42 | 39.44 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 45 | 39.45 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 64 | 39.48 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 73 | 39.49 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 74 | 39.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 121 | 39.57 | temperature | 30.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 134 | 39.61 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 144 | 39.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 161 | 39.67 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 179 | 39.68 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 308 | 39.70 | temperature | 30.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 310 | 39.70 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 312 | 39.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 313 | 39.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 321 | 39.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 323 | 39.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 337 | 39.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 339 | 39.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 340 | 39.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 341 | 39.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 390 | 39.72 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 436 | 39.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 439 | 39.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 443 | 39.73 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 474 | 39.74 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 619 | 39.80 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 642 | 39.80 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 662 | 39.80 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 703 | 39.82 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 725 | 39.83 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 732 | 39.83 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 738 | 39.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 862 | 39.85 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |