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Os04g0644800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cl- channel, voltage gated family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0241) R2 : 0.821
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.96 (0.0655) R2dC : 0.433 R2C : 0.66
β3 : -1.5 (0.0824) R2dE : 0.16 R2E : 0.387
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.0507) R2dN8 : 0.00231 R2N8 : -0.000496
σ : 0.452
deviance : 94.36
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C
peak time of C : 14.3
E
wheather : wind
threshold : 4.7
memory length : 108
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.87
open length of G : 3.92

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.17 0.441 9.75 0.0652 1.95 -1.48 -1.43 -0.774 0.116 14.3 4.862 94 2.98 3.93
88.42 0.438 9.76 0.106 1.96 -1.54 -1.27 -- 0.111 14.2 4.589 107 2.88 3.91
94.23 0.452 9.75 0.0795 1.96 -1.48 -- 0.132 0.12 14.3 4.801 108 2.88 3.92
94.23 0.452 9.75 0.0677 1.96 -1.5 -- -- 0.116 14.3 4.692 108 2.86 3.93
262.61 0.755 9.74 0.0377 -- -2.3 -- -0.102 0.19 -- 6.769 73 2.25 4.92
138.08 0.551 9.77 -0.00993 2.62 -- -0.829 -- 0.0982 15.2 -- -- -- --
140.29 0.555 9.77 -0.0265 2.62 -- -- -- 0.0934 15.3 -- -- -- --
242.12 0.725 9.74 0.00935 -- -2.24 -- -- 0.192 -- 9.583 92 1.12 5.76
94.36 0.452 9.75 -- 1.96 -1.5 -- -- 0.109 14.3 4.7 108 2.87 3.92
527.95 1.07 9.78 -0.138 -- -- -- -- 0.0247 -- -- -- -- --
140.31 0.554 9.77 -- 2.62 -- -- -- 0.0964 15.3 -- -- -- --
233 0.711 9.75 -- -- -2.11 -- -- 0.185 -- 12.3 157 0.0167 6.5
528.45 1.07 9.77 -- -- -- -- -- 0.0399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.45 wind 5.0 90 < th dose dependent rect. 3 4
5 91.46 wind 5.0 270 < th dose independent rect. 2 3
8 91.83 precipitation 0.1 270 < th dose independent rect. 2 3
9 91.83 precipitation 0.1 270 < th dose dependent rect. 2 3
18 93.23 wind 5.0 270 < th dose independent rect. 1 5
22 93.59 temperature 10.0 270 > th dose dependent rect. 2 3
23 93.60 temperature 25.0 270 < th dose independent rect. 2 3
26 93.85 wind 9.0 90 < th dose independent rect. 7 20
27 93.91 wind 9.0 270 < th dose independent rect. 5 21
28 93.92 humidity 70.0 90 > th dose independent rect. 3 4
30 93.95 radiation 20.0 90 < th dose independent rect. 3 4
31 93.97 wind 5.0 10 < th dose dependent rect. 4 3
34 94.00 temperature 10.0 90 > th dose independent rect. 3 4
37 94.00 humidity 50.0 90 > th dose independent rect. 3 4
39 94.00 atmosphere 995.0 90 > th dose independent rect. 3 4
40 94.00 atmosphere 1015.0 90 < th dose independent rect. 3 4
42 94.00 temperature 10.0 90 > th dose independent rect. 7 20
43 94.17 precipitation 0.1 270 < th dose independent rect. 1 5
44 94.17 precipitation 0.1 270 < th dose dependent rect. 1 5
60 94.29 temperature 10.0 270 > th dose independent rect. 5 21
61 94.30 radiation 30.0 270 < th dose dependent rect. 2 3
63 94.31 radiation 1.0 270 < th dose independent rect. 2 3
76 94.79 precipitation 0.1 90 < th dose independent rect. 7 20
77 94.79 precipitation 0.1 90 < th dose dependent rect. 7 20
79 94.95 temperature 10.0 270 > th dose dependent rect. 1 5
80 94.99 humidity 50.0 90 > th dose dependent rect. 3 4
88 95.37 precipitation 0.1 270 < th dose independent rect. 3 1
89 95.37 precipitation 0.1 270 < th dose dependent rect. 3 1
115 96.13 atmosphere 1010.0 270 < th dose independent rect. 1 5
116 96.14 radiation 10.0 270 < th dose independent rect. 1 5
119 96.24 temperature 10.0 270 > th dose independent rect. 1 5
122 96.24 humidity 50.0 270 > th dose independent rect. 1 5
125 96.24 atmosphere 995.0 270 > th dose independent rect. 1 5
135 96.48 precipitation 0.1 270 < th dose independent rect. 5 21
136 96.48 precipitation 0.1 270 < th dose dependent rect. 5 21
141 96.57 radiation 40.0 270 < th dose dependent rect. 1 5
146 96.66 atmosphere 1015.0 90 < th dose dependent rect. 3 4
165 97.17 temperature 10.0 10 > th dose dependent rect. 4 3
167 97.22 wind 5.0 10 < th dose independent rect. 4 3
198 97.45 atmosphere 995.0 90 > th dose independent rect. 7 20
204 97.50 wind 1.0 270 > th dose independent rect. 3 1
208 97.74 precipitation 0.1 10 < th dose independent rect. 4 3
209 97.74 precipitation 0.1 10 < th dose dependent rect. 4 3
215 97.84 wind 9.0 10 < th dose independent rect. 7 21
228 98.08 temperature 10.0 10 > th dose independent rect. 4 3
230 98.08 temperature 30.0 10 < th dose independent rect. 4 3
231 98.08 humidity 50.0 10 > th dose independent rect. 4 3
234 98.08 atmosphere 995.0 10 > th dose independent rect. 4 3
235 98.08 atmosphere 1015.0 10 < th dose independent rect. 4 3
236 98.08 radiation 20.0 10 < th dose independent rect. 4 3
239 98.08 temperature 10.0 10 > th dose independent rect. 7 21
259 98.29 humidity 50.0 270 > th dose dependent rect. 1 5
260 98.30 atmosphere 1015.0 10 < th dose dependent rect. 4 3
266 98.41 humidity 50.0 10 > th dose dependent rect. 4 3
448 100.01 humidity 60.0 90 > th dose dependent rect. 21 6
458 100.14 radiation 40.0 10 < th dose dependent rect. 4 3
505 100.59 atmosphere 995.0 10 > th dose independent rect. 7 21
524 100.76 atmosphere 995.0 270 > th dose independent rect. 5 21
568 101.04 humidity 90.0 720 < th dose dependent rect. 19 2
592 101.34 atmosphere 1015.0 90 < th dose independent rect. 7 20
638 101.84 radiation 40.0 90 < th dose independent rect. 7 20
658 102.02 radiation 1.0 270 < th dose dependent rect. 1 8
667 102.11 atmosphere 1015.0 90 < th dose dependent rect. 4 1
679 102.19 radiation 1.0 270 < th dose dependent rect. 1 17
684 102.27 atmosphere 1005.0 90 > th dose independent rect. 3 4
698 102.40 humidity 90.0 90 > th dose independent rect. 4 1
724 102.51 radiation 1.0 270 < th dose independent rect. 1 8
758 102.64 wind 9.0 90 < th dose dependent rect. 7 20
779 102.84 radiation 40.0 270 < th dose dependent rect. 15 15
792 102.97 atmosphere 1005.0 10 > th dose independent rect. 4 3
807 103.07 precipitation 0.1 270 < th dose independent rect. 15 14
808 103.07 precipitation 0.1 270 < th dose dependent rect. 15 14
811 103.09 wind 1.0 270 > th dose independent rect. 6 19
821 103.16 atmosphere 1015.0 1440 < th dose independent rect. 3 5
852 103.33 radiation 30.0 270 < th dose independent rect. 15 14
886 103.46 radiation 1.0 270 < th dose independent rect. 1 17
890 103.49 atmosphere 995.0 90 > th dose dependent rect. 3 4
969 103.92 temperature 10.0 270 > th dose independent rect. 5 10
970 103.92 atmosphere 1015.0 270 < th dose independent rect. 5 10
971 103.92 temperature 10.0 270 > th dose independent rect. 15 14
980 103.97 wind 9.0 90 < th dose independent rect. 21 6
984 103.98 temperature 10.0 90 > th dose independent rect. 21 6
985 103.98 temperature 30.0 90 < th dose independent rect. 21 6
986 103.98 humidity 50.0 90 > th dose independent rect. 21 6
989 103.98 atmosphere 995.0 90 > th dose independent rect. 21 6
990 103.98 radiation 1.0 90 < th dose independent rect. 21 6
995 103.98 temperature 10.0 90 > th dose independent rect. 3 18
996 103.98 atmosphere 1015.0 90 < th dose independent rect. 3 18
998 103.98 radiation 10.0 90 < th dose dependent rect. 21 6