Os03g0695700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloride channel protein CLC-d (AtCLC-d).
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Os03g0695700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloride channel protein CLC-d (AtCLC-d).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.94 | 0.204 | 10.9 | -0.494 | 0.506 | -0.697 | -0.099 | 0.358 | 0.29 | 6.04 | 23.32 | 57 | -- | -- |
| 19.02 | 0.203 | 10.9 | -0.538 | 0.512 | -0.666 | -0.158 | -- | 0.279 | 6.01 | 23.31 | 57 | -- | -- |
| 18.97 | 0.203 | 10.9 | -0.486 | 0.504 | -0.7 | -- | 0.4 | 0.294 | 6.02 | 23.26 | 57 | -- | -- |
| 19.06 | 0.203 | 10.9 | -0.547 | 0.514 | -0.658 | -- | -- | 0.274 | 5.99 | 23.22 | 57 | -- | -- |
| 26.82 | 0.241 | 10.9 | -0.333 | -- | -1.08 | -- | 1.11 | 0.336 | -- | 24.1 | 227 | -- | -- |
| 25.98 | 0.239 | 10.9 | -0.676 | 0.735 | -- | 0.218 | -- | 0.18 | 5.02 | -- | -- | -- | -- |
| 26.1 | 0.239 | 10.9 | -0.677 | 0.736 | -- | -- | -- | 0.179 | 5.05 | -- | -- | -- | -- |
| 27.44 | 0.244 | 10.9 | -0.488 | -- | -0.992 | -- | -- | 0.298 | -- | 24.1 | 203 | -- | -- |
| 26.29 | 0.239 | 10.9 | -- | 0.475 | -0.807 | -- | -- | 0.376 | 6.29 | 21.74 | 73 | -- | -- |
| 54.56 | 0.345 | 11 | -0.65 | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
| 38.17 | 0.289 | 10.9 | -- | 0.724 | -- | -- | -- | 0.255 | 5.09 | -- | -- | -- | -- |
| 33.51 | 0.27 | 10.9 | -- | -- | -1.07 | -- | -- | 0.371 | -- | 23.72 | 203 | -- | -- |
| 65.71 | 0.378 | 10.9 | -- | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 3 | 18.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 6 | 18.21 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 29 | 18.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 31 | 18.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 42 | 18.81 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 45 | 18.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 63 | 18.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 128 | 19.18 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 160 | 19.23 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 185 | 19.27 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 191 | 19.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 192 | 19.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 321 | 19.43 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 341 | 19.45 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 355 | 19.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 493 | 19.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 533 | 19.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 726 | 19.95 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 19 |
| 766 | 19.99 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 774 | 19.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 850 | 20.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 860 | 20.08 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 926 | 20.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 987 | 20.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 988 | 20.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |