BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0695700 Os03g0695700|AK059537
(269 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26240.1 | chr5:9189622-9194347 FORWARD LENGTH=793 361 e-100
AT5G49890.1 | chr5:20288489-20292143 REVERSE LENGTH=780 171 4e-43
AT5G33280.1 | chr5:12549280-12552305 FORWARD LENGTH=766 154 5e-38
AT5G40890.1 | chr5:16381645-16384999 REVERSE LENGTH=776 134 5e-32
AT3G27170.1 | chr3:10024147-10026921 FORWARD LENGTH=781 131 3e-31
>AT5G26240.1 | chr5:9189622-9194347 FORWARD LENGTH=793
Length = 792
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/268 (67%), Positives = 213/268 (79%), Gaps = 4/268 (1%)
Query: 1 LCVIMVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
LCVIMVEITNN ISKAVGD FNEGLYEVQA+L+GIPLL+SRPK MR M
Sbjct: 526 LCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQM 585
Query: 61 SAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGESLVIGLILRSHLLVL 120
AK+AC++QKV+SLPRV R+ D+ S+L SNKHNGFPV+D ++GE+LVIGL+LRSHLLVL
Sbjct: 586 IAKEACQSQKVISLPRVIRVADVASILGSNKHNGFPVIDHTRSGETLVIGLVLRSHLLVL 645
Query: 121 LQSKVDFQNSPFPCGPGILN-RHNTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLN 179
LQSKVDFQ+SP PC P N RH+ S+F KP SSKG I+DIHLT D+L +Y+DLAPFLN
Sbjct: 646 LQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLN 705
Query: 180 PSPYIVPEDMSLAKVYNLFRQLGLRHIFVVPRPSRVVGLITRQDLLLEENGNNVTTEL-Q 238
PSPY+VPEDMSL KVYNLFRQLGLRH+FVVPRPSRV+GLITR+DLL+EENG + EL Q
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQ 765
Query: 239 STSVRGQLNGKMLSGSTHLGHPLLDSIV 266
STSVRG+ + + PLLD ++
Sbjct: 766 STSVRGRYSET--ATRMDAARPLLDDLL 791
>AT5G49890.1 | chr5:20288489-20292143 REVERSE LENGTH=780
Length = 779
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 134/232 (57%), Gaps = 6/232 (2%)
Query: 1 LCVIMVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
LCVI++E+TNN ISK V D FN G+Y+ ++G+P ++ + MRN+
Sbjct: 538 LCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNL 597
Query: 61 SAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGE-SLVIGLILRSHLLV 119
AKD ++S RV ++ I L+ +HNGFPV+D E S + G+ LRSHLLV
Sbjct: 598 VAKDVVSGA-LISFSRVEKVGVIWQALKMTRHNGFPVIDEPPFTEASELCGIALRSHLLV 656
Query: 120 LLQSKVDFQNSPFPCGPGILNRHNTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLN 179
LLQ K F G IL DF K KG I+D+ L+E+E+ +Y+DL P N
Sbjct: 657 LLQGK-KFSKQRTTFGSQILRSCKARDFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITN 715
Query: 180 PSPYIVPEDMSLAKVYNLFRQLGLRHIFVVPR-PSR--VVGLITRQDLLLEE 228
SPY V E +SLAK LFRQLGLRH+ VVP+ P R +VG++TR D + E
Sbjct: 716 TSPYTVLETLSLAKAAILFRQLGLRHLCVVPKTPGRPPIVGILTRHDFMPEH 767
>AT5G33280.1 | chr5:12549280-12552305 FORWARD LENGTH=766
Length = 765
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 122/209 (58%), Gaps = 6/209 (2%)
Query: 24 ISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNMSAKDACKNQKVVSLPRVSRIVDI 83
ISK V D FN +Y + +L+G P L S + MR + D V + ++ I
Sbjct: 535 ISKTVADGFNANIYNLIMKLKGFPYLYSHAEPYMRQLLVGDVVTGPLQV-FNGIEKVETI 593
Query: 84 ISVLRSNKHNGFPVVDRGQNGESLVI-GLILRSHLLVLLQSKVDFQNSPFPCGPGILNRH 142
+ VL++ HNGFPVVD + V+ GLILR+H+L LL+ +V F SP C L++
Sbjct: 594 VHVLKTTNHNGFPVVDGPPLAAAPVLHGLILRAHILTLLKKRV-FMPSPVACDSNTLSQF 652
Query: 143 NTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLNPSPYIVPEDMSLAKVYNLFRQLG 202
+F K S + I+D+ L+E+EL +YLDL PF N SPY V E MSLAK LFR++G
Sbjct: 653 KAEEFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVG 712
Query: 203 LRHIFVVPRPSR---VVGLITRQDLLLEE 228
+RH+ V+P+ S VVG++TR D + E
Sbjct: 713 IRHLLVIPKTSNRPPVVGILTRHDFMPEH 741
>AT5G40890.1 | chr5:16381645-16384999 REVERSE LENGTH=776
Length = 775
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 25/238 (10%)
Query: 1 LCVIMVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
LCVI +E+TNN I+K VGD FN +YE+ L+G+P L++ P+ MRN+
Sbjct: 528 LCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNL 587
Query: 61 SAKDACKNQK-VVSLPRVSRIVDIISVLRSNKHNGFPVVDRG-QNGESLVIGLILRSHLL 118
+ + + VV+L V ++ +I+ VLR+ HN FPV+D QN + + GLILR+HL+
Sbjct: 588 TVGELNDAKPPVVTLNGVEKVANIVDVLRNTTHNAFPVLDGADQNTGTELHGLILRAHLV 647
Query: 119 VLLQSKVDFQNSPFPCGPGILNRHNTSDF-----VKPA--SSKGKSIDDIHLTEDELGLY 171
+L+ + F N + T ++ P + + + DD+ +T E+ LY
Sbjct: 648 KVLKKRW-FLNE----------KRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLY 696
Query: 172 LDLAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHIFVVPR-----PSRVVGLITRQDL 224
+DL P N +PY V + MS+AK LFR +GLRH+ VVP+ S V+G++TRQDL
Sbjct: 697 VDLHPLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDL 754
>AT3G27170.1 | chr3:10024147-10026921 FORWARD LENGTH=781
Length = 780
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 31/244 (12%)
Query: 1 LCVIMVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
LCVI +E+TNN I+K VGD FN +Y++ L+G+P L++ P+ MRN+
Sbjct: 527 LCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNL 586
Query: 61 SAKDACKNQK-VVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQ-------NGESLVIGLI 112
+ + + VV+L V ++ +I+ VL++ HN FPV+D + G + + GLI
Sbjct: 587 TVGELGDAKPPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLI 646
Query: 113 LRSHLLVLLQSKVDFQNSPFPCGPGILNRHNTSDF-------VKPASSKGKSIDDIHLTE 165
LR+HL+ +L+ + + T ++ + + + DD+ +T
Sbjct: 647 LRAHLVKVLKKRWFLTE-----------KRRTEEWEVREKFPWDELAEREDNFDDVAITS 695
Query: 166 DELGLYLDLAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHIFVVPRPSR-----VVGLIT 220
E+ +Y+DL P N +PY V E+MS+AK LFRQ+GLRH+ +VP+ VVG++T
Sbjct: 696 AEMEMYVDLHPLTNTTPYTVMENMSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILT 755
Query: 221 RQDL 224
RQDL
Sbjct: 756 RQDL 759
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,560,430
Number of extensions: 235063
Number of successful extensions: 563
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 5
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)