BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0695700 Os03g0695700|AK059537
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0695700 Similar to Chloride channel protein CLC-d (AtC... 513 e-146
AK066027 175 3e-44
Os02g0558100 Similar to C1C-Nt1 protein 168 5e-42
Os12g0438600 Similar to Chloride channel protein CLC-a (AtC... 140 1e-33
AK110503 101 7e-22
>Os03g0695700 Similar to Chloride channel protein CLC-d (AtCLC-d)
Length = 269
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/269 (95%), Positives = 257/269 (95%)
Query: 1 LCVIMVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
LCVIMVEITNN ISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM
Sbjct: 1 LCVIMVEITNNLKLLPLIMLVLLISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
Query: 61 SAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGESLVIGLILRSHLLVL 120
SAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGESLVIGLILRSHLLVL
Sbjct: 61 SAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGESLVIGLILRSHLLVL 120
Query: 121 LQSKVDFQNSPFPCGPGILNRHNTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLNP 180
LQSKVDFQNSPFPCGPGILNRHNTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLNP
Sbjct: 121 LQSKVDFQNSPFPCGPGILNRHNTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLNP 180
Query: 181 SPYIVPEDMSLAKVYNLFRQLGLRHIFVVPRPSRVVGLITRQDLLLEENGNNVTTELQST 240
SPYIVPEDMSLAKVYNLFRQLGLRHIFVVPRPSRVVGLITRQDLLLEENGNNVTTELQST
Sbjct: 181 SPYIVPEDMSLAKVYNLFRQLGLRHIFVVPRPSRVVGLITRQDLLLEENGNNVTTELQST 240
Query: 241 SVRGQLNGKMLSGSTHLGHPLLDSIVVEE 269
SVRGQLNGKMLSGSTHLGHPLLDSIVVEE
Sbjct: 241 SVRGQLNGKMLSGSTHLGHPLLDSIVVEE 269
>AK066027
Length = 773
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 139/232 (59%), Gaps = 5/232 (2%)
Query: 1 LCVIMVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
+CVI++E+TN+ ISK + D FN+G+Y+ ++G+P +++ + MRN+
Sbjct: 531 VCVILLELTNDLHMLPLVMLVLLISKTIADSFNKGVYDQIVVMKGLPFMEAHAEPFMRNL 590
Query: 61 SAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGES-LVIGLILRSHLLV 119
A D +++ V ++ +I+ LR HNGFPVVD E+ ++GL+LRSHLLV
Sbjct: 591 VAGDVVSG-PLITFSGVEKVGNIVHALRITGHNGFPVVDEPPVSEAPELVGLVLRSHLLV 649
Query: 120 LLQSKVDFQNSPFPCGPGILNRHNTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLN 179
LL+ + + G +L R DF KP S KG I+D+ LT++EL +Y+DL P N
Sbjct: 650 LLKGRSFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGLKIEDLDLTDEELDMYVDLHPITN 709
Query: 180 PSPYIVPEDMSLAKVYNLFRQLGLRHIFVVPR-PSR--VVGLITRQDLLLEE 228
SPY V E MSLAK LFR LGLRH+ VVP+ P R +VG++TR D + E
Sbjct: 710 TSPYTVVETMSLAKAAVLFRALGLRHLLVVPKTPGRPPIVGILTRHDFMHEH 761
>Os02g0558100 Similar to C1C-Nt1 protein
Length = 659
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 137/232 (59%), Gaps = 5/232 (2%)
Query: 1 LCVIMVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNM 60
+CVI++E+TN+ ISK + D FN+G+Y+ ++G+P +++ + MR++
Sbjct: 409 VCVILLELTNDLAMLPLVMLVLLISKTIADNFNKGVYDQIVVMKGLPYMEAHAEPYMRHL 468
Query: 61 SAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGES-LVIGLILRSHLLV 119
A D +++ V ++ +I+ LR HNGFPVVD E+ ++GL+ RSHLLV
Sbjct: 469 VAGDVVSG-PLITFSGVEKVGNIVHALRFTGHNGFPVVDEPPLTEAPELVGLVTRSHLLV 527
Query: 120 LLQSKVDFQNSPFPCGPGILNRHNTSDFVKPASSKGKSIDDIHLTEDELGLYLDLAPFLN 179
LL K+ ++ G +L R DF KP S KG I D+ T++E+ +Y+DL P N
Sbjct: 528 LLNGKMFMKDQLKTSGSFVLQRFGAFDFAKPGSGKGLKIQDLDFTDEEMEMYVDLHPVTN 587
Query: 180 PSPYIVPEDMSLAKVYNLFRQLGLRHIFVVPR-PSR--VVGLITRQDLLLEE 228
SPY V E MSLAK LFR LGLRH+ VVP+ P R +VG++TR D + E
Sbjct: 588 TSPYTVVETMSLAKAAILFRALGLRHLLVVPKTPDRPPIVGILTRHDFVEEH 639
>Os12g0438600 Similar to Chloride channel protein CLC-a (AtCLC-a)
Length = 707
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 24/215 (11%)
Query: 24 ISKAVGDFFNEGLYEVQAQLRGIPLLDSRPKQVMRNMSAKD-ACKNQKVVSLPRVSRIVD 82
I+K VGD FN +YE+ L+G+P L+++P+ M++++ + A + V+L V R+
Sbjct: 486 IAKTVGDAFNPSIYEIILDLKGLPFLEAKPEPWMKDLTVGELAAAKPRAVALQVVERVST 545
Query: 83 IISVLRSNKHNGFPVVDRGQNGESLVIGLILRSHLLVLLQSKVDFQNSPFPCGPGILNRH 142
++ LR+ +HNGFPV+DR + G S + GL+LRSHL+ L+ + R
Sbjct: 546 VVEALRATRHNGFPVLDRPRPGVSELHGLVLRSHLVAALRKRWFLPE-----------RR 594
Query: 143 NTSDF-------VKPASSKGKSIDDIHLTEDELGLYLDLAPFLNPSPYIVPEDMSLAKVY 195
T ++ + K +D++ ++ +E+G+Y+DL P N +PY V E MS+AK
Sbjct: 595 RTEEWEAREMFSSAELADKCGGVDELEISPEEMGMYVDLHPLTNTTPYTVVETMSVAKAV 654
Query: 196 NLFRQLGLRHIFVVPR-----PSRVVGLITRQDLL 225
LFR + LRH+ ++P+ S +VG++TRQDL+
Sbjct: 655 VLFRSVALRHMLIMPKFQGPEISPIVGILTRQDLI 689
>AK110503
Length = 800
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 19/232 (8%)
Query: 1 LCVI--MVEITNNXXXXXXXXXXXXISKAVGDFFNEGLYEVQAQLRGIPLLDSRP---KQ 55
+CV+ M+E+T++ +S+++ + F + ++ + IP L P
Sbjct: 337 VCVVAFMIEVTSDLQFVLPVIVAALVSRSIANRFGQSMFNTFIAFKNIPFLPPEPVTSNA 396
Query: 56 VMRNMSAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGESLVIGLILRS 115
++ M A D ++ VV+LP R+ D + V + H GFPV + G L GLI R
Sbjct: 397 LLNKMRAYD-IMSRPVVALPVHCRVADALRVCQKTTHQGFPVTRGSKRGGELT-GLISRK 454
Query: 116 HLLVLLQSKVDFQNSPFPCGPGILNRHNTSDFVKPASSKGKSIDDI--HLTEDELGLYLD 173
LL+LL+ K+ P + D+ K S+D++ LT+D+ +LD
Sbjct: 455 FLLILLKHKI--WRDP--------TLYTGRDYHFMMQKKILSVDEVKAELTDDDREQWLD 504
Query: 174 LAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHIFVVPRPSRVVGLITRQDLL 225
L F+N +P V E+ + A Y +FR LGLRH+ V+ ++ VG++TR++LL
Sbjct: 505 LRAFMNRAPTRVHENTNAALTYRIFRLLGLRHLPVINHQNKCVGIVTRKNLL 556
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,361,875
Number of extensions: 344405
Number of successful extensions: 731
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 5
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)