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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0438600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chloride channel protein CLC-a (AtCLC-a).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.7 (0.0878) R2 : 0.522
β1 : -0.298 (0.468) R2dD : 0.00125 R2D : 0.00467
β2 : 0.597 (0.181) R2dC : 0.0115 R2C : -0.00955
β3 : -4.13 (0.308) R2dE : 0.264 R2E : 0.151
β4 : 3.77 (0.695) R2dD*C : 0.0312 R2D*C : -0.0243
β5 : 18.3 (1.85) R2dD*E : 0.301 R2D*E : 0.211
γ1 : 0.728 (0.199) R2dN8 : 0.0283 R2N8 : -0.0456
σ : 1.43
deviance : 931.88
__
_____
C
peak time of C : 12.8
E
wheather : temperature
threshold : 22.02
memory length : 560
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
931.88 1.43 4.7 -0.298 0.597 -4.13 3.77 18.3 0.728 12.8 22.02 560 -- --
1115.7 1.56 5.06 -3.61 0.247 -4.02 2.36 -- -0.095 12.9 14.63 689 -- --
968.99 1.45 4.75 -0.137 1.05 -3.79 -- 19.2 0.646 11.5 21.84 354 -- --
1086.39 1.54 5.02 -2.89 1.56 -3.26 -- -- -0.019 8.44 11.18 6199 -- --
1013.96 1.48 4.71 -0.0926 -- -4.22 -- 18.8 0.75 -- 21.99 526 -- --
1270.27 1.67 5.18 -4.46 1.6 -- -1.48 -- -0.773 7.73 -- -- -- --
1272.01 1.67 5.18 -4.48 1.6 -- -- -- -0.765 8.39 -- -- -- --
1166.05 1.59 5.09 -3.56 -- -3.25 -- -- -0.158 -- 18.96 744 -- --
1190.37 1.61 4.82 -- 1.55 -4.05 -- -- 0.856 8.16 8.603 24924 -- --
1414.82 1.76 5.22 -4.47 -- -- -- -- -0.748 -- -- -- -- --
1801.42 1.99 5.07 -- 1.58 -- -- -- -0.266 8.6 -- -- -- --
1321.17 1.69 4.86 -- -- -4.05 -- -- 0.876 -- 8.473 25197 -- --
1942.57 2.06 5.11 -- -- -- -- -- -0.252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 854.15 radiation 1 14400 < th dose dependent rect. 4 1
6 894.81 wind 1 43200 > th dose dependent rect. 13 1
7 896.30 radiation 1 14400 < th dose dependent rect. 18 11
8 897.98 radiation 1 14400 < th dose dependent rect. 18 1
9 897.98 radiation 1 14400 < th dose dependent rect. 18 5
10 898.07 radiation 1 14400 < th dose dependent rect. 18 3
13 898.37 wind 5 43200 > th dose independent rect. 13 3
20 899.15 wind 9 43200 < th dose dependent rect. 13 1
21 899.42 wind 5 43200 < th dose independent rect. 13 3
22 899.44 radiation 1 14400 < th dose dependent rect. 18 9
25 899.58 wind 5 43200 < th dose independent rect. 12 5
26 899.60 wind 3 43200 > th dose dependent rect. 13 3
40 902.51 radiation 1 14400 < th dose independent rect. 18 7
41 902.54 radiation 1 14400 < th dose dependent rect. 22 7
44 902.67 radiation 1 14400 < th dose independent rect. 18 5
46 902.76 radiation 1 14400 < th dose independent rect. 18 9
50 902.88 radiation 1 14400 < th dose independent rect. 18 3
52 903.02 radiation 1 14400 < th dose independent rect. 18 1
116 910.81 wind 9 43200 < th dose dependent rect. 11 5
179 918.82 wind 1 43200 > th dose independent rect. 9 2
182 919.08 wind 1 43200 > th dose independent rect. 24 1
198 920.62 wind 1 43200 < th dose independent rect. 24 1
202 920.80 wind 1 43200 < th dose dependent rect. 24 1
214 922.26 radiation 30 14400 < th dose independent rect. 16 1
223 922.98 radiation 30 14400 < th dose independent rect. 16 5
226 923.51 radiation 1 14400 > th dose independent rect. 18 1
247 924.15 radiation 20 14400 < th dose independent rect. 1 5
251 924.39 wind 9 43200 < th dose dependent rect. 11 10
254 924.67 wind 1 43200 < th dose independent rect. 23 3
302 929.08 radiation 20 14400 < th dose independent rect. 18 12
312 930.22 radiation 1 4320 > th dose dependent rect. 18 11
347 932.93 wind 1 43200 > th dose independent rect. 19 1
349 933.19 wind 5 43200 < th dose independent sin 20 NA
371 934.64 radiation 40 43200 > th dose independent rect. 10 1
376 935.00 radiation 20 43200 > th dose independent rect. 8 2
379 935.12 radiation 20 14400 < th dose independent rect. 3 3
388 935.72 wind 1 43200 > th dose independent rect. 23 3
394 936.05 radiation 30 14400 < th dose independent rect. 16 15
424 937.35 humidity 90 14400 < th dose dependent rect. 3 1
438 937.73 wind 5 43200 > th dose independent sin 20 NA
465 938.62 wind 3 43200 > th dose dependent sin 20 NA
475 938.97 radiation 10 43200 > th dose dependent rect. 9 1
489 939.25 radiation 10 43200 > th dose independent rect. 6 1
519 940.37 wind 3 43200 < th dose dependent rect. 9 3
534 941.01 radiation 1 4320 > th dose dependent rect. 18 1
548 941.24 wind 3 43200 < th dose dependent rect. 11 1
566 942.16 wind 1 43200 < th dose independent rect. 21 5
583 942.85 radiation 1 43200 > th dose dependent rect. 18 11
611 943.38 atmosphere 1005 43200 < th dose independent rect. 18 5
651 944.52 radiation 1 43200 > th dose dependent rect. 18 1
668 944.65 radiation 20 43200 < th dose independent rect. 8 3
688 945.18 radiation 10 43200 > th dose dependent rect. 5 6
701 945.20 wind 9 43200 < th dose dependent sin 21 NA
702 945.23 radiation 30 43200 < th dose dependent rect. 8 1
721 945.47 radiation 30 43200 < th dose independent rect. 9 1
728 945.63 wind 1 43200 < th dose independent rect. 19 7
733 945.88 wind 1 43200 < th dose dependent rect. 13 13
772 946.55 wind 5 43200 < th dose dependent rect. 19 2
800 946.81 atmosphere 1005 43200 < th dose independent rect. 22 1
847 947.37 wind 1 43200 < th dose dependent rect. 19 7
880 947.73 radiation 20 43200 > th dose independent sin 9 NA
910 948.10 radiation 40 43200 > th dose independent sin 9 NA
912 948.12 radiation 20 43200 < th dose independent rect. 1 11
913 948.13 radiation 20 43200 < th dose independent rect. 3 9
917 948.15 radiation 20 43200 < th dose independent rect. 18 18
921 948.16 radiation 20 43200 < th dose independent rect. 21 15
925 948.19 wind 1 43200 < th dose dependent rect. 21 5
960 948.68 temperature 20 720 > th dose dependent rect. 4 21
993 949.10 radiation 10 43200 > th dose dependent sin 9 NA
996 949.22 humidity 80 43200 < th dose independent rect. 21 1