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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0876100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cl- channel, voltage gated family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0242) R2 : 7.6e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00947 (0.0509) R2dN8 : 9.81e-05 R2N8 : 7.6e-05
σ : 0.455
deviance : 95.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.46 0.445 -78.9 501 0.0509 -15500 -0.0336 94800 -0.0123 10.3 995 272 -- --
94.65 0.457 3.05 -0.0466 0.0383 0.414 -0.102 -- -0.0131 10.2 995 272 -- --
91.48 0.445 -79.1 502 0.055 -15500 -- 94800 -0.00734 10.1 995 271 -- --
91.07 0.444 3.05 -0.0618 0.0399 1.39 -- -- -0.00638 10.4 994.5 234 -- --
91.64 0.446 -78.7 500 -- -15500 -- 94700 -0.00905 -- 995 271 -- --
94.85 0.457 3.05 -0.0436 0.0395 -- -0.0897 -- -0.0143 10.7 -- -- -- --
94.87 0.456 3.05 -0.0466 0.0427 -- -- -- -0.0141 12.3 -- -- -- --
91.23 0.445 3.05 -0.0624 -- 1.37 -- -- -0.00871 -- 994.5 242 -- --
91.17 0.445 3.05 -- 0.0399 1.38 -- -- -0.00637 10.5 994.5 234 -- --
94.99 0.455 3.05 -0.048 -- -- -- -- -0.0148 -- -- -- -- --
94.93 0.456 3.05 -- 0.0434 -- -- -- -0.00894 12.4 -- -- -- --
91.33 0.445 3.05 -- -- 1.37 -- -- -0.00188 -- 994.6 254 -- --
95.05 0.455 3.05 -- -- -- -- -- -0.00947 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.94 humidity 70.0 720 > th dose independent rect. 3 6
2 88.12 wind 1.0 30 < th dose independent rect. 2 1
3 88.15 wind 3.0 30 < th dose dependent rect. 2 1
4 88.19 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 88.20 humidity 80.0 30 > th dose independent rect. 2 1
8 88.22 humidity 80.0 30 > th dose dependent rect. 2 1
9 88.23 wind 9.0 30 < th dose independent rect. 3 23
11 88.23 temperature 15.0 30 > th dose dependent rect. 2 1
12 88.24 temperature 25.0 30 < th dose independent rect. 2 1
15 88.24 humidity 60.0 30 > th dose dependent rect. 2 1
24 88.26 temperature 10.0 30 > th dose independent rect. 2 1
28 88.26 humidity 50.0 30 > th dose independent rect. 2 1
31 88.26 atmosphere 995.0 30 > th dose independent rect. 2 1
32 88.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 88.26 radiation 1.0 30 < th dose independent rect. 2 1
39 88.26 precipitation 0.1 30 < th dose independent rect. 2 1
40 88.26 temperature 10.0 30 > th dose independent rect. 3 23
42 88.26 radiation 1.0 30 < th dose dependent rect. 2 1
47 88.26 precipitation 0.1 30 < th dose dependent rect. 2 1
48 88.28 atmosphere 1005.0 30 > th dose independent rect. 2 1
50 88.30 humidity 90.0 720 < th dose independent rect. 1 4
52 88.34 atmosphere 1015.0 30 < th dose dependent rect. 2 1
53 88.38 temperature 30.0 30 < th dose dependent rect. 2 1
57 88.48 humidity 90.0 720 < th dose independent rect. 24 6
75 88.71 wind 1.0 30 > th dose independent rect. 2 1
79 88.74 humidity 70.0 720 > th dose independent rect. 20 13
107 88.82 humidity 70.0 720 < th dose independent rect. 8 1
114 89.01 humidity 90.0 720 < th dose independent rect. 24 12
115 89.02 humidity 50.0 720 > th dose dependent rect. 3 6
116 89.11 atmosphere 995.0 30 > th dose independent rect. 3 23
117 89.13 atmosphere 1005.0 90 > th dose dependent rect. 1 4
126 89.38 atmosphere 1005.0 270 > th dose dependent rect. 1 1
128 89.43 temperature 30.0 720 > th dose dependent rect. 8 1
143 89.48 humidity 90.0 720 < th dose independent rect. 1 1
152 89.55 temperature 25.0 90 > th dose independent rect. 1 3
160 89.67 temperature 25.0 90 > th dose dependent rect. 1 4
161 89.68 humidity 90.0 720 < th dose independent rect. 24 20
162 89.69 temperature 25.0 270 > th dose independent rect. 1 1
164 89.70 atmosphere 995.0 720 > th dose independent rect. 3 14
185 89.98 atmosphere 995.0 270 > th dose independent rect. 12 11
187 90.00 temperature 30.0 720 < th dose independent rect. 3 6
191 90.08 temperature 30.0 720 > th dose independent rect. 8 1
208 90.12 atmosphere 995.0 720 > th dose independent rect. 5 10
231 90.37 humidity 50.0 720 > th dose independent rect. 17 10
233 90.37 wind 7.0 30 > th dose dependent rect. 18 2
239 90.41 wind 9.0 720 < th dose independent rect. 5 10
245 90.45 precipitation 0.1 30 < th dose independent rect. 3 23
248 90.45 precipitation 0.1 30 < th dose dependent rect. 3 23
249 90.47 radiation 40.0 30 < th dose independent rect. 21 14
250 90.49 wind 7.0 30 > th dose independent rect. 18 2
256 90.51 humidity 60.0 10 > th dose independent rect. 21 14
260 90.53 wind 9.0 720 < th dose independent rect. 3 14
261 90.53 atmosphere 995.0 720 > th dose independent rect. 21 18
263 90.55 humidity 50.0 720 > th dose dependent rect. 21 11
268 90.57 humidity 70.0 720 > th dose dependent rect. 5 2
270 90.59 precipitation 0.1 720 < th dose independent rect. 15 14
272 90.59 precipitation 0.1 720 < th dose dependent rect. 15 14
299 90.64 humidity 50.0 270 > th dose dependent rect. 20 13
306 90.65 humidity 90.0 720 < th dose dependent rect. 24 6
314 90.71 radiation 30.0 720 < th dose independent rect. 3 6
315 90.72 humidity 70.0 1440 > th dose independent rect. 7 2
322 90.74 atmosphere 995.0 720 > th dose independent rect. 3 22
332 90.79 atmosphere 995.0 720 > th dose independent rect. 12 20
340 90.81 humidity 90.0 720 < th dose independent sin 7 NA
360 90.82 humidity 90.0 720 < th dose independent rect. 17 19
368 90.84 wind 7.0 270 > th dose dependent rect. 16 1
369 90.85 precipitation 0.1 720 < th dose independent rect. 17 10
371 90.85 precipitation 0.1 720 < th dose dependent rect. 17 10
383 90.88 humidity 90.0 720 < th dose independent rect. 15 21
393 90.90 atmosphere 1000.0 90 < th dose independent rect. 17 3
408 90.91 atmosphere 995.0 720 > th dose independent rect. 13 2
410 90.91 atmosphere 1000.0 90 < th dose dependent rect. 17 3
414 90.92 temperature 10.0 720 > th dose independent rect. 5 10
415 90.92 atmosphere 1015.0 720 < th dose independent rect. 5 10
417 90.92 temperature 10.0 720 > th dose independent rect. 15 14
420 90.93 humidity 90.0 720 > th dose independent rect. 3 3
425 90.94 radiation 40.0 720 < th dose dependent rect. 17 10
428 90.95 humidity 70.0 1440 > th dose independent rect. 24 9
434 90.96 temperature 10.0 720 > th dose independent rect. 17 10
435 90.96 radiation 20.0 720 < th dose independent rect. 17 10
438 90.96 temperature 10.0 720 > th dose independent rect. 3 14
439 90.96 humidity 70.0 1440 < th dose dependent rect. 8 1
453 90.98 wind 9.0 720 < th dose independent rect. 20 19
457 90.99 atmosphere 1005.0 90 < th dose independent rect. 18 1
478 91.03 atmosphere 1000.0 10 < th dose independent rect. 17 4
485 91.04 wind 7.0 30 < th dose independent rect. 14 12
490 91.05 temperature 30.0 270 > th dose dependent rect. 16 18
496 91.07 temperature 30.0 720 < th dose independent rect. 19 14
499 91.09 humidity 90.0 720 < th dose dependent rect. 3 2
502 91.10 wind 1.0 10 < th dose independent rect. 9 18
504 91.10 humidity 90.0 720 < th dose dependent rect. 1 1
518 91.15 wind 7.0 270 < th dose independent rect. 23 13
520 91.15 atmosphere 1000.0 10 < th dose dependent rect. 17 4
532 91.19 radiation 10.0 270 > th dose independent rect. 17 1
543 91.19 wind 7.0 270 < th dose independent rect. 12 11
551 91.19 radiation 10.0 270 > th dose dependent rect. 17 1
572 91.21 temperature 10.0 30 > th dose dependent rect. 19 10
573 91.21 humidity 50.0 30 > th dose dependent rect. 21 14
574 91.22 atmosphere 995.0 270 < th dose independent rect. 16 1
579 91.23 precipitation 0.1 720 < th dose independent rect. 5 10
581 91.23 atmosphere 995.0 270 < th dose dependent rect. 16 1
586 91.23 precipitation 0.1 720 < th dose dependent rect. 5 10
587 91.24 wind 9.0 4320 < th dose independent rect. 3 1
600 91.25 temperature 20.0 90 > th dose dependent rect. 19 1
603 91.26 radiation 1.0 43200 < th dose dependent rect. 3 1
606 91.27 humidity 90.0 90 < th dose independent rect. 19 1
612 91.27 humidity 50.0 720 > th dose independent rect. 15 21
616 91.28 humidity 90.0 720 > th dose independent rect. 1 5
617 91.28 wind 9.0 720 < th dose independent rect. 17 10
620 91.28 precipitation 0.1 720 < th dose independent rect. 8 19
625 91.28 precipitation 0.1 720 < th dose dependent rect. 8 19
626 91.29 wind 1.0 10 > th dose independent sin 19 NA
637 91.31 atmosphere 995.0 90 < th dose independent rect. 18 1
657 91.31 atmosphere 995.0 90 < th dose dependent rect. 18 1
659 91.31 temperature 30.0 270 > th dose dependent rect. 16 2
681 91.32 temperature 10.0 1440 > th dose independent rect. 3 1
684 91.32 temperature 30.0 1440 < th dose independent rect. 3 1
688 91.32 humidity 50.0 1440 > th dose independent rect. 3 1
697 91.32 atmosphere 995.0 1440 > th dose independent rect. 3 1
698 91.32 radiation 1.0 1440 < th dose independent rect. 3 1
718 91.32 humidity 50.0 720 > th dose independent rect. 15 5
720 91.32 atmosphere 995.0 720 > th dose independent rect. 10 14
721 91.32 temperature 10.0 1440 > th dose independent rect. 4 23
724 91.32 radiation 1.0 1440 < th dose dependent rect. 3 1
776 91.33 humidity 50.0 720 > th dose independent rect. 15 14
782 91.34 precipitation 0.1 720 < th dose independent rect. 15 22
785 91.34 precipitation 0.1 720 < th dose dependent rect. 15 22
789 91.35 humidity 90.0 720 < th dose dependent rect. 24 9
790 91.36 wind 9.0 720 < th dose independent rect. 13 2
791 91.36 atmosphere 1005.0 30 > th dose independent rect. 2 3
792 91.36 precipitation 0.1 720 < th dose independent rect. 15 5
804 91.36 precipitation 0.1 720 < th dose dependent rect. 15 5
807 91.37 atmosphere 995.0 720 > th dose independent rect. 12 5
808 91.37 temperature 10.0 720 > th dose independent rect. 15 6
809 91.37 radiation 20.0 270 < th dose independent rect. 20 12
810 91.37 temperature 10.0 720 > th dose independent rect. 21 18
816 91.38 wind 9.0 720 < th dose independent rect. 3 5
817 91.38 temperature 10.0 720 > th dose independent rect. 3 5
821 91.38 atmosphere 995.0 720 > th dose independent rect. 3 5
822 91.38 wind 7.0 90 < th dose independent rect. 1 12
824 91.38 temperature 10.0 720 > th dose independent rect. 8 19
831 91.39 atmosphere 1015.0 720 < th dose independent rect. 15 5
848 91.40 atmosphere 995.0 720 > th dose independent rect. 5 19
855 91.41 temperature 20.0 270 < th dose independent rect. 9 1
862 91.42 wind 1.0 720 > th dose independent rect. 15 5
876 91.44 wind 9.0 720 < th dose independent rect. 3 21
880 91.44 wind 9.0 90 < th dose dependent rect. 1 12
902 91.45 atmosphere 995.0 720 > th dose independent rect. 20 21
906 91.46 atmosphere 995.0 270 > th dose independent sin 11 NA
932 91.47 radiation 1.0 720 > th dose independent rect. 8 4
936 91.47 humidity 90.0 720 < th dose independent rect. 8 22
957 91.48 humidity 90.0 720 < th dose independent rect. 17 13
959 91.48 wind 9.0 720 < th dose independent rect. 12 20
966 91.49 radiation 40.0 10 < th dose independent rect. 3 23
967 91.49 atmosphere 995.0 270 < th dose dependent sin 11 NA
972 91.50 humidity 50.0 720 > th dose independent rect. 5 10
973 91.50 atmosphere 995.0 720 > th dose independent rect. 15 14
980 91.51 wind 9.0 720 < th dose independent rect. 3 12
982 91.51 humidity 90.0 720 < th dose independent rect. 15 15
995 91.52 atmosphere 995.0 270 < th dose dependent sin 14 NA