BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0431300 Os12g0431300|AK110931
(777 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0431300 TolB, C-terminal domain containing protein 1615 0.0
Os03g0403400 TolB, C-terminal domain containing protein 863 0.0
Os03g0314500 TolB, C-terminal domain containing protein 771 0.0
Os03g0840200 TolB, C-terminal domain containing protein 336 5e-92
Os07g0638100 TolB, C-terminal domain containing protein 226 7e-59
>Os12g0431300 TolB, C-terminal domain containing protein
Length = 777
Score = 1615 bits (4181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/777 (100%), Positives = 777/777 (100%)
Query: 1 MGKSRGSIAFFGTYRPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQPIPAAALKE 60
MGKSRGSIAFFGTYRPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQPIPAAALKE
Sbjct: 1 MGKSRGSIAFFGTYRPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQPIPAAALKE 60
Query: 61 LLTFLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRFVAGGKQVKVL 120
LLTFLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRFVAGGKQVKVL
Sbjct: 61 LLTFLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRFVAGGKQVKVL 120
Query: 121 SLGNIYGADTFGGVRMEDSGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTVVYRTD 180
SLGNIYGADTFGGVRMEDSGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTVVYRTD
Sbjct: 121 SLGNIYGADTFGGVRMEDSGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTVVYRTD 180
Query: 181 LADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQG 240
LADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQG
Sbjct: 181 LADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQG 240
Query: 241 RSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIAAGKEERVTDESID 300
RSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIAAGKEERVTDESID
Sbjct: 241 RSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIAAGKEERVTDESID 300
Query: 301 AMTPAAISETQVAVATVREKSKQVLMKVERVVTQYRHIEIFDTASKTSVPITQKTRPEGD 360
AMTPAAISETQVAVATVREKSKQVLMKVERVVTQYRHIEIFDTASKTSVPITQKTRPEGD
Sbjct: 301 AMTPAAISETQVAVATVREKSKQVLMKVERVVTQYRHIEIFDTASKTSVPITQKTRPEGD 360
Query: 361 HYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFRVTG 420
HYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFRVTG
Sbjct: 361 HYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFRVTG 420
Query: 421 VFPSVSKNGKKLAFVDNEFKAVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLDTLYVCE 480
VFPSVSKNGKKLAFVDNEFKAVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLDTLYVCE
Sbjct: 421 VFPSVSKNGKKLAFVDNEFKAVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLDTLYVCE 480
Query: 481 GPAFSIDKPVQIMRIPNVSREDYENMETFPLTDEEYNCAFPSTNAEGTKLVFRSSRNRVA 540
GPAFSIDKPVQIMRIPNVSREDYENMETFPLTDEEYNCAFPSTNAEGTKLVFRSSRNRVA
Sbjct: 481 GPAFSIDKPVQIMRIPNVSREDYENMETFPLTDEEYNCAFPSTNAEGTKLVFRSSRNRVA 540
Query: 541 GGERQHKNLYIIDAEKGEAAGVVPLTDGPWTDTHCSWSPREGCDWIVFSSTGRPEKDIVK 600
GGERQHKNLYIIDAEKGEAAGVVPLTDGPWTDTHCSWSPREGCDWIVFSSTGRPEKDIVK
Sbjct: 541 GGERQHKNLYIIDAEKGEAAGVVPLTDGPWTDTHCSWSPREGCDWIVFSSTGRPEKDIVK 600
Query: 601 GKDEPEKDHGLDPGYFAVYLVNAKDIKKGEVPVPVRVIHSAPTIAGHINHPVFSPDMKSI 660
GKDEPEKDHGLDPGYFAVYLVNAKDIKKGEVPVPVRVIHSAPTIAGHINHPVFSPDMKSI
Sbjct: 601 GKDEPEKDHGLDPGYFAVYLVNAKDIKKGEVPVPVRVIHSAPTIAGHINHPVFSPDMKSI 660
Query: 661 VFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDIQEFHRITHSRYEYS 720
VFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDIQEFHRITHSRYEYS
Sbjct: 661 VFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDIQEFHRITHSRYEYS 720
Query: 721 TPTWTGIADDEEDPNAKWKMLESLPNFTPWCPYARGEAGEKEGWHMTGHLTIQKRCC 777
TPTWTGIADDEEDPNAKWKMLESLPNFTPWCPYARGEAGEKEGWHMTGHLTIQKRCC
Sbjct: 721 TPTWTGIADDEEDPNAKWKMLESLPNFTPWCPYARGEAGEKEGWHMTGHLTIQKRCC 777
>Os03g0403400 TolB, C-terminal domain containing protein
Length = 744
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/786 (59%), Positives = 563/786 (71%), Gaps = 54/786 (6%)
Query: 2 GKSRGSIAFFGTYRPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQPIPAAALKEL 61
G+SRGSIAFF TYRPPVPLD+FSCP PPP S +DEL LTDG SYN + +PIPAAAL+ L
Sbjct: 3 GESRGSIAFFATYRPPVPLDVFSCPVAPPPSSPRDELHLTDGVSYNHSCRPIPAAALRAL 62
Query: 62 LTFLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRFVAGGKQVKVLS 121
L + PKLASE AT D + GR+TGLVFVSERD GLETLHVALRF GGKQVKV
Sbjct: 63 L-----QRPKLASE--ATTADVDAGRITGLVFVSERDSGLETLHVALRF-DGGKQVKVFG 114
Query: 122 LGNIYGAD-TFGGVRMEDSGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTVVYRTD 180
L +I+GA F GVRMEDSGC GG++ V H+LVYVST+ PV ARR+PWTVVY T+
Sbjct: 115 LADIFGAGGDFSGVRMEDSGCFGGGYRERGRAVDHTLVYVSTREPVAARRSPWTVVYGTN 174
Query: 181 LADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQ--QNRWNGEIENLKTDIVVMNVDKRA 238
L G+T RLTP G +DLSPAVSPSGK VAVA++Q W+GEIE+L+TDI VMNV K
Sbjct: 175 LRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWDGEIEDLRTDIYVMNVHKPP 234
Query: 239 QGRSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIAAGKEERVTDES 298
GR+ ++K+ GWPTWGSD+VIFFHR TT WGVFRF ++ G+E RVT E
Sbjct: 235 LGRT--GPVVKNAGWPTWGSDDVIFFHRRVGTT-------WGVFRFSMSTGEEARVTPEE 285
Query: 299 IDAMTPAAISETQVAVATVREKSKQVLMKVERVVTQYRHIEIFDTAS-KTSVPITQKTRP 357
DA+TPAAISET+VAVAT+R KS+ ++VE QYRHIEIFD AS + V ITQKTRP
Sbjct: 286 FDAVTPAAISETKVAVATIRRKSQFSDVRVEE---QYRHIEIFDVASPEQPVKITQKTRP 342
Query: 358 EGDHYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFR 417
+ DH+NPFVLDGG+R+GYHRC++++L +S+ F K+Q P H DVGLFR
Sbjct: 343 KTDHFNPFVLDGGSRIGYHRCKSEQL---HQNNGGGGSSVANNFHKLQSP--HKDVGLFR 397
Query: 418 VTGVFPSVSKNGKKLAFVDNEFKAVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLDTLY 477
V+GV P++SK+G KLAFVDNEFKAVWLAD GLRVVY+ + SVFST+WNQN LDTLY
Sbjct: 398 VSGVCPTISKDGSKLAFVDNEFKAVWLADSHGLRVVYEKKGPNSVFSTAWNQNTALDTLY 457
Query: 478 VCEGPAFSIDKPVQIMRIPNVSREDYENMETFPLTDEEYNCAFPSTNAEGTKLVFRSSRN 537
VC GP+FS DKP+QI I +VS LT N AFPS++ +G +LVFRS+R+
Sbjct: 458 VCVGPSFSADKPLQIYAIHDVSALGGRQQRR--LTAGASNNAFPSSSPDGGRLVFRSTRD 515
Query: 538 RVAGGERQHKNLYII-DAEKGE--AAGVVPLTDGPWTDTHCSWSPREGCDWIVFSSTGRP 594
G R+HKNLY++ DA GE + V LT G WTDTHCSWSPREG DWIVFSST
Sbjct: 516 GGG-GGRRHKNLYVMEDAAVGEFGTSKVTRLTSGAWTDTHCSWSPREGSDWIVFSST--- 571
Query: 595 EKDIVKGKDEPEKDHGLDPGYFAVYLVNAKDIKKGEVPVPVRVIHSAPTIAGHINHPVFS 654
+D K P D+GLDPGYFAV+LV A D V VRV+ SA ++AGH+NHPVFS
Sbjct: 572 -RD--KPAAAPADDNGLDPGYFAVFLVRASDPT-----VVVRVVRSADSVAGHVNHPVFS 623
Query: 655 PDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDIQEFHRITH 714
PD +SI ADLAAVSADPIS+P F HSVRPYGDIF+V++ D D++KNRD++ FHR+TH
Sbjct: 624 PDGRSIAVTADLAAVSADPISLPLFLHSVRPYGDIFTVDI-DPDDISKNRDVRAFHRVTH 682
Query: 715 SRYEYSTPTWTGIADDEEDPNAKWKML---ESLPNFTPWCPYARGEAGEKEGWHMTGHLT 771
SRYE STP WT A D DPNA+W L + + P CPYA + G+ WHMTGHL
Sbjct: 683 SRYENSTPAWTTFATD--DPNAQWSTLVTTKEAAAYRPACPYAHPDGGDS--WHMTGHLL 738
Query: 772 IQKRCC 777
+ KRCC
Sbjct: 739 LPKRCC 744
>Os03g0314500 TolB, C-terminal domain containing protein
Length = 730
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/786 (53%), Positives = 535/786 (68%), Gaps = 65/786 (8%)
Query: 1 MGKSRGSIAFFGTYRPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQPIPAAALKE 60
MG+SRGSIAFF +YRPPV LDIF CPA PP S KDEL LTDG+SYN N QPIP AALK
Sbjct: 1 MGESRGSIAFFASYRPPVALDIFCCPA--PPSSPKDELHLTDGDSYNYNCQPIPPAALKT 58
Query: 61 LLTFLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRFVAGGKQVKVL 120
++ LG S A D + GR+TGLVFVSER+ LETLH+ALRF G +V+V
Sbjct: 59 VVERLG------VSRGDAVEGDIDSGRITGLVFVSEREHNLETLHIALRFNDDG-EVQVF 111
Query: 121 SLGNIYGAD-TFGGVRMEDSGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTVVYRT 179
SL + YG D F G RMEDSGC+AGG++V TV H LVYVSTK PV+ RR+PW V Y+T
Sbjct: 112 SLADAYGGDGLFSGARMEDSGCIAGGYEVDGRTVDHYLVYVSTKEPVRERRSPWNVAYKT 171
Query: 180 DLADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQ 239
+L G+TERLTP G +D+SP+VSPSGK VAVA++Q +W+GEI+NL T+I VM+++ +Q
Sbjct: 172 NLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNTNIYVMSLENPSQ 231
Query: 240 GRSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIAAGKEERVTDESI 299
DR+ +I++GGWP+WGS++VIFFHR + WGVFR ++ G+ RVT +
Sbjct: 232 ---DRERVIENGGWPSWGSEDVIFFHR---KDGDGENSCWGVFRHTLSTGETVRVTPAAF 285
Query: 300 DAMTPAAISETQVAVATVREKSKQVLMKVERVVTQYRHIEIFDTAS-KTSVPITQKTRPE 358
D++TPAAI ET+VAVA +R+KS+ ++VE QYRHIE+FD S + + IT+ TRP+
Sbjct: 286 DSVTPAAIDETRVAVAAIRQKSEFSDVRVE---AQYRHIEVFDMRSPEQPMQITRNTRPK 342
Query: 359 GDHYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFRV 418
DH+NPFV+DGG +GYHRC+++ L Q+ P R+F K+Q P H DVG+FRV
Sbjct: 343 ADHFNPFVMDGGKFIGYHRCKSELL---QHGDDLP-----RKFHKLQSP--HEDVGVFRV 392
Query: 419 TGVFPSVSKNGKKLAFVDNEFKAVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLDTLYV 478
+GVFP+ SK+G +LAFVDNEFK+VWLAD +G+RVV+K SVFS WN D+ LYV
Sbjct: 393 SGVFPTFSKDGSQLAFVDNEFKSVWLADSQGMRVVFKTDGPDSVFSPLWNSKKDI--LYV 450
Query: 479 CEGPAFSIDKPVQIMRIPNVSREDYENMETFPLTDEEYNCAFPSTNAEGTKLVFRSSRNR 538
C GP+F + ++I I NVS D ++ + LT +N AFPSTN +GTK VFRS+R+
Sbjct: 451 CMGPSFKASETLEIHSIHNVSTGDRKSRQ---LTFGGFNNAFPSTNPDGTKFVFRSTRD- 506
Query: 539 VAGGERQHKNLYII------DAEKGEAAGVVPLTDGPWTDTHCSWSPREGCDWIVFSST- 591
GG + KNLYI+ + E G + V +T G WTDTHC WSP WIVFSS
Sbjct: 507 --GGAKYSKNLYIMEDADAGEGEDGSQSTVTRMTAGEWTDTHCQWSPN--GKWIVFSSNR 562
Query: 592 GRPEKDIVKGKDEPEKDHGLDPGYFAVYLVNAKDIKKGEVPVPVRVIHSAPTIAGHINHP 651
RP D PE+DHGLDPGYFAVYL+ D+ V VRVI S +AGH+NHP
Sbjct: 563 DRP-------ADAPERDHGLDPGYFAVYLM---DVASRSV---VRVIRSGYDVAGHVNHP 609
Query: 652 VFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDIQEFHR 711
VFSPD +SI +DLAAV+ADP+S+P F HSVRPYGDIF+V++ D DMA+N D++ F R
Sbjct: 610 VFSPDGRSIAVTSDLAAVTADPMSLPLFLHSVRPYGDIFTVDI-DPDDMARNEDVEGFVR 668
Query: 712 ITHSRYEYSTPTWTGIADDEEDPNAKWKMLESLPNFTPWCPYARGEAGEKEGWHMTGHLT 771
+THSRYE STP WT + DP+A+W +L P CPYA + GE WHMTG +
Sbjct: 669 VTHSRYENSTPAWTVFS--THDPHAQWNLLVVEDEHVPSCPYAHPDGGES--WHMTGQIC 724
Query: 772 IQKRCC 777
I KR C
Sbjct: 725 IPKRHC 730
>Os03g0840200 TolB, C-terminal domain containing protein
Length = 688
Score = 336 bits (861), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 260/741 (35%), Positives = 350/741 (47%), Gaps = 145/741 (19%)
Query: 6 GSIAFFGTYRPPVPLDIFSCPANPPPQ--SAKDELLLTDGESYNQNGQPIPAAALKELLT 63
G+I F R DIFS P P P +A EL LTDG S N NG PA+ + +
Sbjct: 28 GTIVFTTLGRSRYEFDIFSLPLAPSPHNPAAAAELRLTDGVSVNYNGNFAPAS---DSIL 84
Query: 64 FLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRFVAGGKQVKVLSLG 123
F+ ++N L P S R LE+ +
Sbjct: 85 FVSERNGSLNLYLSPVP--------------SSRREALESA----------SSSSSSAAA 120
Query: 124 NIYGADTFGGVRMEDSGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTVVYRTDLAD 183
I + + ++D + T G LVYVST P R+ W VY T+L+
Sbjct: 121 TISPLLPWEPIALKD--------RPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELST 172
Query: 184 GKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQGRSD 243
G+T RLTPLG D SPAVSPSG+ A A+ W+GE+E+L+TDI V R S
Sbjct: 173 GRTRRLTPLGVADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVF----RTADGSR 228
Query: 244 RKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIA-------AGKEERVTD 296
R + I+DGGWP+W + +FFHR + +GV+R +I+ A ER+T
Sbjct: 229 RSLAIRDGGWPSWADETTVFFHRR------DSDGWYGVYRAEISVTGDGVEAASVERITP 282
Query: 297 ESIDAMTPAAI--SETQVAVATVREKSKQVLMKVERVVTQYRHIEIFDTAS---KTSVPI 351
A TPAA + VAVAT R S YRHIE+ D +S +
Sbjct: 283 PGFHAFTPAASPGAPGLVAVATRRAGS------------DYRHIEVIDVSSDGKNAYFEV 330
Query: 352 TQKTRPEGDHYNPFVLDGGTRVGYHRCR----TDKLLKVQNQKSTPTTSIQRRFDKVQPP 407
T+ P H+NPF+ G RVGYHRCR D L ++N KS P
Sbjct: 331 TRPVAPRVHHFNPFISPDGARVGYHRCRGRGNGDSPLLLENIKS---------------P 375
Query: 408 ESHADVGLFRVTGVFPSVSKNGKKLAFVDNEFKAVWLADGRGLRVVYKVRATKSVFSTSW 467
S LFR+ G FPS S +GKK+AFV V +DG G R + + + FSTSW
Sbjct: 376 GSPDTFSLFRIDGSFPSFSHDGKKIAFVGLPGMYVVNSDGSGGR---RKIFSGNAFSTSW 432
Query: 468 NQNDDLDTLYVCEGPAFSID-KPVQIMRIPNVSREDYENMETFPLTDEEYNCAFPSTNAE 526
+ +Y GP F+ + V ++ I +D + LT N AFPS + +
Sbjct: 433 DWKRK-GVVYTSIGPDFASETTEVDVVAISLGDDDDESTISMKKLTVGGENNAFPSPSPD 491
Query: 527 GTKLVFRSSRNRVAGGERQHKNLYIIDAEKGEAAGVVPLTDGPWTDTHCSWSPREGCDWI 586
G +VFRS R+ +KNLYIIDAE GEA G+ LT+GPW+DT C+WSP +WI
Sbjct: 492 GKWVVFRSGRS-------GNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPD--GEWI 542
Query: 587 VFSSTGRPEKDIVKGKDEPEKDHGLDPGYFAVYLV--NAKDIKKGEVPVPVRVIHSAPTI 644
F+S H G FA+Y+V N ++ RV+HS +
Sbjct: 543 AFAS----------------DRHAPGSGSFAIYMVHPNGTGLR--------RVVHSGGS- 577
Query: 645 AGHINHPVFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNR 704
G NHP FSPD KS+VF +D AAVSA+P+S PH +PYG+IF+V++
Sbjct: 578 -GRTNHPWFSPDSKSLVFTSDYAAVSAEPVSNPHH---YQPYGEIFTVDI---------- 623
Query: 705 DIQEFHRITHSRYEYSTPTWT 725
D R+TH+ +E TP+WT
Sbjct: 624 DGSNIRRLTHNSFEDGTPSWT 644
>Os07g0638100 TolB, C-terminal domain containing protein
Length = 659
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 196/624 (31%), Positives = 279/624 (44%), Gaps = 116/624 (18%)
Query: 135 RMEDSGCVAGGFKVGRTTV-GHSLVYVSTKAPVKARRTPWTVVYRTDLADGKTERLTPLG 193
R E V G R TV G L +VS A W VY T++ +T R++P G
Sbjct: 81 RAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSWAAVYATEIGSKETVRVSPPG 140
Query: 194 QYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQGRSDRKVLIKDGGW 253
D+SPAVS SG++VAVA++ W + L+T++ V RA + R V++ GGW
Sbjct: 141 VVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVF----RAADPARRVVVVGRGGW 196
Query: 254 PTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIA------AGKEERVTDESIDAMTPAAI 307
PTW + +FFHR D W VFR D++ G E RVT + TPAA+
Sbjct: 197 PTWHGEGTVFFHRVAD------DGWWSVFRVDVSPETLEPTGGERRVTPPGLHCFTPAAV 250
Query: 308 SETQ----VAVATVREKSKQVLMKVERVVTQYRHIEIFDTASKTSVPITQKTRPEGDHYN 363
+AVAT R+ Q RH+E+FD +++ P+T++ PE HYN
Sbjct: 251 GRGGGGRWIAVATRRKGRAQ------------RHVELFDLETESFSPLTERLNPELHHYN 298
Query: 364 PFVLDGGTRVGYHR-----CRTDKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFRV 418
PF G RVGYHR R D ++ +P +S++ + RV
Sbjct: 299 PFFSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVSSLR----------------MLRV 342
Query: 419 TGVFPSVSKNGKKLAFVDNEFK----AVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLD 474
G FPS S + LA + FK + +DG V+ + ++F TSW+ +
Sbjct: 343 YGTFPSFSPDAAHLAMNGDFFKTPGVTILRSDGAKRWVLTR---EPNLFYTSWSPAES-G 398
Query: 475 TLYVCEGPAFSIDKP-VQIMRIP------NVSREDYENMETFPLTDEEYNCAFPSTNAEG 527
++ GP F K V+I R+ R++ E N AFP+ + G
Sbjct: 399 VIFTSMGPIFETTKATVRIARLEFDAGELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCG 458
Query: 528 TKLVFRSSRNRVAGGERQHKNLYIIDAEKGEAAG-----VVPLTDGPWTDTHCSWSPREG 582
+VFRS R+ HKNLYI+DA GE G + LTDG W DT SWSP
Sbjct: 459 KWVVFRSGRS-------GHKNLYIVDAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGS 511
Query: 583 CDWIVFSSTGRPEKDIVKGKDEPEKDHGLDPGYFAVYLV--NAKDIKKGEVPVPVRVIHS 640
I FSS + +P + F++YLV + +++ V P S
Sbjct: 512 L--IAFSSN----------RHDPT-----NAAVFSIYLVRPDGSGLRRVHVAGPA---GS 551
Query: 641 APTIAGHINHPVFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDM 700
A INH FSPD + ++F A+ V A+PIS P + +PYGD++ L
Sbjct: 552 AAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAP---NQFQPYGDLYVCRL------ 602
Query: 701 AKNRDIQEFHRITHSRYEYSTPTW 724
D R+T + YE TP W
Sbjct: 603 ----DGSGLVRLTCNAYENGTPAW 622
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,652,949
Number of extensions: 1372251
Number of successful extensions: 3097
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3038
Number of HSP's successfully gapped: 5
Length of query: 777
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 668
Effective length of database: 11,344,475
Effective search space: 7578109300
Effective search space used: 7578109300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)