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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0314500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TolB, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.65 (0.0583) R2 : 0.302
β1 : -2.23 (0.212) R2dD : 0.185 R2D : 0.0618
β2 : 0.768 (0.147) R2dC : 0.0435 R2C : 0.0137
β3 : 17 (2.45) R2dE : 1.14 R2E : -1.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -61.9 (8.49) R2dD*E : 1.23 R2D*E : -1.07
γ1 : -0.589 (0.122) R2dN8 : 0.0498 R2N8 : 0.012
σ : 1.06
deviance : 516.85
__
_____
C
peak time of C : 4.05
E
wheather : precipitation
threshold : 0.06987
memory length : 311
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.0182
open length of G : 4.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
513.07 1.06 3.66 -2.26 0.769 16.7 -1.17 -60.1 -0.606 3.86 0.1043 308 24 4.15
565.91 1.12 3.56 -1.99 0.931 -0.399 -2.26 -- -0.7 4.24 0.1043 308 24 4.15
516.85 1.06 3.65 -2.23 0.768 17 -- -61.9 -0.589 4.05 0.06987 311 0.0182 4.13
573.76 1.12 3.56 -2 0.8 0.541 -- -- -0.656 4 -0.04819 45 3.6 1.88
546.2 1.09 3.68 -2.26 -- 17.1 -- -60.5 -0.553 -- 0.1134 330 24 3.76
566.07 1.12 3.56 -1.99 0.928 -- -2.28 -- -0.699 4.24 -- -- -- --
580.54 1.13 3.55 -1.97 0.915 -- -- -- -0.687 4.29 -- -- -- --
581.63 1.12 3.57 -1.99 -- 0.733 -- -- -0.704 -- -0.04737 32 3.15 5.65
678.03 1.21 3.5 -- 0.667 0.384 -- -- -0.443 4.17 -0.1585 71 2.87 2.64
625.64 1.17 3.56 -1.93 -- -- -- -- -0.662 -- -- -- -- --
682.6 1.22 3.5 -- 0.877 -- -- -- -0.468 4.33 -- -- -- --
680.14 1.21 3.53 -- -- 0.702 -- -- -0.527 -- -0.09177 19 1.83 7.13
724.03 1.26 3.51 -- -- -- -- -- -0.448 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 516.79 precipitation 0.1 270 > th dose independent rect. 24 4
2 516.87 precipitation 0.1 270 > th dose dependent rect. 24 4
13 520.42 precipitation 0.1 270 > th dose independent rect. 3 1
14 520.46 precipitation 0.1 270 > th dose dependent rect. 3 1
39 525.98 wind 3.0 90 > th dose independent rect. 2 6
40 526.03 wind 1.0 90 > th dose dependent rect. 2 6
53 527.26 humidity 90.0 10 > th dose dependent rect. 3 20
65 528.44 humidity 90.0 10 > th dose independent rect. 3 3
73 529.75 atmosphere 1005.0 10 > th dose independent rect. 19 8
78 530.65 humidity 90.0 90 > th dose independent rect. 3 2
79 530.77 atmosphere 1005.0 270 > th dose independent rect. 19 6
96 531.27 humidity 90.0 10 > th dose independent rect. 3 7
99 531.27 humidity 90.0 10 > th dose dependent rect. 24 23
112 531.57 wind 9.0 1440 < th dose independent rect. 24 3
113 531.58 atmosphere 1005.0 270 > th dose independent rect. 21 3
114 531.63 atmosphere 995.0 10 > th dose dependent rect. 23 4
116 531.71 atmosphere 1015.0 30 < th dose dependent rect. 16 17
120 531.92 wind 1.0 270 > th dose dependent rect. 1 4
128 532.13 atmosphere 1000.0 10 > th dose dependent rect. 19 8
133 532.30 humidity 90.0 10 > th dose independent rect. 3 20
137 532.36 wind 5.0 270 < th dose dependent rect. 22 1
172 533.09 precipitation 0.1 90 > th dose independent rect. 2 17
179 533.19 atmosphere 1005.0 10 > th dose independent rect. 23 4
181 533.28 precipitation 0.1 90 > th dose dependent sin 5 NA
193 533.63 atmosphere 1015.0 270 < th dose dependent rect. 14 15
194 533.71 precipitation 0.1 90 > th dose independent sin 5 NA
213 533.87 precipitation 0.1 30 > th dose dependent rect. 3 15
217 533.88 temperature 25.0 270 < th dose independent rect. 24 6
227 534.02 humidity 90.0 90 > th dose dependent rect. 3 2
229 534.15 temperature 25.0 270 < th dose independent rect. 1 4
262 534.52 wind 5.0 270 > th dose independent rect. 3 2
272 534.61 atmosphere 1000.0 10 > th dose independent rect. 3 20
275 534.66 precipitation 0.1 90 < th dose independent sin 5 NA
277 534.66 precipitation 0.1 90 < th dose dependent sin 5 NA
281 534.69 precipitation 0.1 30 > th dose independent sin 1 NA
287 534.77 precipitation 0.1 30 > th dose dependent sin 1 NA
290 534.78 temperature 30.0 10 < th dose dependent rect. 23 4
299 534.85 wind 3.0 270 < th dose independent rect. 22 1
309 534.96 precipitation 0.1 90 > th dose independent rect. 24 19
311 534.98 humidity 90.0 10 < th dose independent rect. 21 19
323 535.06 temperature 25.0 10 < th dose independent rect. 3 5
333 535.16 atmosphere 1015.0 10 < th dose dependent rect. 16 14
340 535.21 wind 9.0 720 > th dose independent rect. 20 1
344 535.21 wind 9.0 720 > th dose dependent rect. 20 1
357 535.26 temperature 30.0 270 < th dose dependent rect. 22 1
365 535.28 wind 7.0 270 > th dose independent rect. 23 6
398 535.50 temperature 25.0 10 < th dose independent rect. 3 3
421 535.62 wind 5.0 270 < th dose independent rect. 21 3
458 535.87 humidity 90.0 10 > th dose dependent rect. 3 3
468 535.93 humidity 90.0 720 > th dose dependent rect. 20 1
508 536.23 humidity 90.0 10 > th dose dependent rect. 3 5
518 536.34 temperature 20.0 90 > th dose independent rect. 16 16
541 536.55 humidity 50.0 270 > th dose independent rect. 24 20
563 536.78 humidity 90.0 10 > th dose dependent rect. 3 11
599 536.98 temperature 30.0 270 < th dose independent rect. 24 19
608 537.02 wind 5.0 10 < th dose independent rect. 23 4
618 537.09 atmosphere 1015.0 270 < th dose independent rect. 24 22
622 537.11 humidity 90.0 10 < th dose independent rect. 21 8
624 537.12 precipitation 0.1 30 < th dose independent sin 1 NA
626 537.12 precipitation 0.1 30 < th dose dependent sin 1 NA
641 537.25 wind 9.0 270 < th dose dependent rect. 21 3
647 537.31 temperature 30.0 90 < th dose independent rect. 2 20
680 537.48 humidity 90.0 270 > th dose dependent rect. 18 11
681 537.48 atmosphere 995.0 10 > th dose dependent rect. 9 18
711 537.66 humidity 90.0 10 > th dose independent rect. 3 11
715 537.66 atmosphere 1010.0 30 < th dose independent rect. 16 17
804 538.12 wind 1.0 30 > th dose independent rect. 23 4
816 538.19 temperature 20.0 90 < th dose independent rect. 23 3
834 538.31 temperature 20.0 10 < th dose independent rect. 23 4
898 538.43 humidity 90.0 10 < th dose independent rect. 21 17
900 538.44 humidity 90.0 270 > th dose dependent rect. 13 16
910 538.48 atmosphere 1000.0 270 > th dose independent rect. 24 20
947 538.62 atmosphere 1010.0 90 < th dose independent rect. 2 7
948 538.62 humidity 90.0 10 < th dose independent rect. 23 17
954 538.67 wind 1.0 270 > th dose independent rect. 21 3
970 538.77 humidity 50.0 90 > th dose independent rect. 2 20