Os03g0840200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TolB, C-terminal domain containing protein.
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Os03g0840200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TolB, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.8 | 0.256 | 13.8 | 0.864 | 1.25 | -0.408 | -0.134 | 2.57 | 0.147 | 11 | 19.7 | 3953 | -- | -- |
| 35.6 | 0.278 | 13.8 | 0.456 | 1.31 | -0.427 | -0.267 | -- | 0.0567 | 11 | 17.07 | 23395 | -- | -- |
| 29.87 | 0.255 | 13.8 | 0.855 | 1.25 | -0.406 | -- | 2.57 | 0.149 | 11 | 19.6 | 3919 | -- | -- |
| 34.94 | 0.275 | 13.8 | 0.411 | 1.26 | -0.509 | -- | -- | 0.0752 | 11.1 | 14.61 | 22159 | -- | -- |
| 121.09 | 0.513 | 13.8 | 1.17 | -- | -0.941 | -- | 4.46 | 0.212 | -- | 24.2 | 3731 | -- | -- |
| 38.14 | 0.29 | 13.9 | 9.49e-05 | 1.27 | -- | -0.237 | -- | -0.123 | 11.1 | -- | -- | -- | -- |
| 38.38 | 0.29 | 13.9 | -0.00975 | 1.27 | -- | -- | -- | -0.124 | 11.1 | -- | -- | -- | -- |
| 127.27 | 0.528 | 13.9 | -0.14 | -- | 0.7 | -- | -- | -0.207 | -- | 24.2 | 3731 | -- | -- |
| 35.68 | 0.278 | 13.9 | -- | 1.26 | -0.326 | -- | -- | -0.0441 | 11 | 13.98 | 8431 | -- | -- |
| 139.59 | 0.552 | 13.9 | -0.039 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 38.38 | 0.29 | 13.9 | -- | 1.27 | -- | -- | -- | -0.123 | 11.1 | -- | -- | -- | -- |
| 114.59 | 0.499 | 13.9 | -- | -- | -1.19 | -- | -- | 0.0211 | -- | 8.458 | 818 | -- | -- |
| 139.63 | 0.552 | 13.9 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.85 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 4 | 28.89 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 11 | 28.94 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 12 | 28.94 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 37 | 29.09 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 41 | 29.13 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 48 | 29.17 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 75 | 29.31 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 78 | 29.32 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 123 | 29.44 | temperature | 20.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 144 | 29.49 | temperature | 20.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 146 | 29.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 151 | 29.50 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 242 | 29.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 262 | 29.66 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 269 | 29.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 285 | 29.69 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 293 | 29.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 294 | 29.70 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 318 | 29.74 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 332 | 29.77 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 338 | 29.77 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 357 | 29.79 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 18 |
| 364 | 29.80 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 389 | 29.83 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 400 | 29.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 418 | 29.86 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 419 | 29.86 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 426 | 29.87 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 432 | 29.88 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 451 | 29.90 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 459 | 29.91 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 489 | 29.93 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 500 | 29.94 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 520 | 29.96 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 523 | 29.97 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 533 | 29.98 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 547 | 29.99 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 569 | 30.01 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 570 | 30.02 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 577 | 30.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 19 |
| 584 | 30.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 597 | 30.04 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 599 | 30.04 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 617 | 30.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 626 | 30.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 630 | 30.06 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 638 | 30.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 654 | 30.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 683 | 30.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 685 | 30.10 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 699 | 30.10 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 728 | 30.12 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 735 | 30.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 736 | 30.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 738 | 30.13 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 746 | 30.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 748 | 30.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 750 | 30.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 767 | 30.14 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 14 | 10 |
| 782 | 30.15 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 7 |
| 790 | 30.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 842 | 30.17 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 843 | 30.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 866 | 30.18 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 14 |
| 867 | 30.18 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 18 |
| 881 | 30.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 882 | 30.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 883 | 30.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 17 |
| 885 | 30.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 902 | 30.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 17 |
| 940 | 30.21 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 17 | NA |
| 956 | 30.22 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 981 | 30.22 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 22 |