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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0403400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TolB, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0372) R2 : 0.00761
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.146 (0.0782) R2dN8 : 0.00983 R2N8 : 0.00761
σ : 0.7
deviance : 224.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
217.54 0.693 2.92 0.306 0.16 0.171 -0.28 -3.02 -0.0893 15.5 79 1652 -- --
223.79 0.697 2.94 0.0801 0.101 -0.0608 0.115 -- -0.149 15.1 78.14 3282 -- --
217.74 0.687 2.92 0.29 0.152 0.139 -- -2.89 -0.0931 15.1 78.63 1630 -- --
222.84 0.695 2.97 0.0596 0.0944 -0.164 -- -- -0.189 14.1 93 3229 -- --
218.95 0.689 2.93 0.268 -- 0.0421 -- -2.71 -0.103 -- 78.29 1630 -- --
223.82 0.701 2.94 0.0784 0.11 -- 0.112 -- -0.136 14.5 -- -- -- --
223.86 0.701 2.94 0.0814 0.111 -- -- -- -0.135 14.8 -- -- -- --
222.41 0.695 2.96 0.136 -- -0.376 -- -- -0.236 -- 94 3229 -- --
222.38 0.695 2.96 -- 0.09 -0.338 -- -- -0.239 13.4 94 3229 -- --
224.57 0.7 2.94 0.0766 -- -- -- -- -0.138 -- -- -- -- --
224.03 0.7 2.94 -- 0.109 -- -- -- -0.144 14.8 -- -- -- --
222.89 0.695 2.96 -- -- -0.35 -- -- -0.243 -- 93.53 3229 -- --
224.72 0.7 2.94 -- -- -- -- -- -0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.64 atmosphere 1005.0 90 < th dose dependent rect. 8 1
14 205.66 humidity 80.0 10 > th dose independent rect. 8 3
20 206.93 humidity 80.0 10 > th dose dependent rect. 10 1
29 207.95 temperature 25.0 10 < th dose dependent rect. 12 4
30 208.00 temperature 25.0 10 < th dose independent rect. 12 4
40 208.49 temperature 25.0 270 < th dose dependent rect. 11 3
52 209.19 temperature 25.0 270 < th dose independent rect. 12 1
67 210.27 temperature 30.0 10 > th dose dependent rect. 17 18
77 210.70 radiation 10.0 30 > th dose dependent rect. 17 1
102 211.58 temperature 30.0 10 > th dose dependent rect. 10 1
164 212.35 temperature 30.0 90 > th dose independent rect. 9 1
170 212.53 radiation 10.0 30 > th dose independent rect. 17 1
185 212.65 humidity 50.0 30 < th dose dependent rect. 17 19
188 212.74 atmosphere 1005.0 270 < th dose dependent rect. 6 1
227 212.98 humidity 50.0 30 < th dose independent rect. 17 21
248 213.06 humidity 50.0 30 < th dose independent rect. 17 19
288 213.23 temperature 25.0 30 < th dose independent rect. 12 16
304 213.29 humidity 50.0 30 < th dose dependent rect. 17 1
350 213.50 humidity 50.0 90 > th dose independent rect. 10 11
356 213.62 humidity 50.0 30 < th dose independent rect. 17 1
403 213.81 radiation 10.0 270 < th dose dependent rect. 12 1
405 213.86 radiation 10.0 270 < th dose independent rect. 12 1
414 214.18 temperature 30.0 30 < th dose dependent rect. 13 15
429 214.30 radiation 20.0 30 < th dose independent rect. 13 15
434 214.42 atmosphere 1005.0 90 < th dose independent rect. 8 1
435 214.43 precipitation 0.1 270 > th dose independent rect. 13 1
439 214.43 precipitation 0.1 270 > th dose dependent rect. 13 1
442 214.45 atmosphere 1005.0 30 > th dose dependent rect. 13 3
452 214.53 radiation 10.0 270 < th dose dependent rect. 9 5
489 214.86 wind 1.0 90 > th dose independent rect. 21 13
490 214.89 atmosphere 1005.0 270 > th dose dependent rect. 24 3
503 215.00 atmosphere 1005.0 30 < th dose dependent rect. 4 7
522 215.12 atmosphere 1005.0 270 > th dose dependent rect. 13 1
524 215.14 radiation 10.0 10 < th dose dependent rect. 14 1
528 215.17 humidity 80.0 90 > th dose independent rect. 21 13
559 215.20 wind 1.0 90 > th dose independent rect. 12 23
579 215.29 radiation 10.0 10 < th dose independent rect. 14 1
582 215.31 humidity 60.0 90 > th dose independent rect. 21 13
595 215.41 atmosphere 1010.0 270 > th dose independent rect. 12 1
604 215.42 humidity 80.0 4320 < th dose independent rect. 7 5
615 215.46 temperature 25.0 90 < th dose independent rect. 11 20
624 215.52 humidity 50.0 30 < th dose dependent sin 9 NA
649 215.65 humidity 50.0 30 < th dose independent sin 9 NA
650 215.65 humidity 50.0 90 > th dose independent rect. 10 23
651 215.66 wind 7.0 90 < th dose independent rect. 21 13
664 215.73 atmosphere 1005.0 270 > th dose independent rect. 24 16
667 215.74 temperature 25.0 10 < th dose dependent rect. 24 17
670 215.75 humidity 80.0 4320 > th dose independent rect. 7 5
676 215.77 atmosphere 1005.0 270 < th dose independent rect. 5 11
692 215.83 atmosphere 1000.0 90 > th dose independent rect. 10 11
696 215.84 radiation 10.0 270 < th dose independent rect. 9 5
701 215.85 atmosphere 1005.0 10 < th dose independent rect. 8 2
745 215.99 precipitation 0.1 90 < th dose independent rect. 21 13
747 215.99 precipitation 0.1 90 < th dose dependent rect. 21 13
766 216.01 humidity 50.0 90 > th dose dependent rect. 21 13
767 216.01 atmosphere 995.0 30 > th dose dependent rect. 13 15
768 216.02 temperature 10.0 90 > th dose independent rect. 10 11
769 216.02 atmosphere 1015.0 90 < th dose independent rect. 10 11
770 216.02 temperature 10.0 90 > th dose independent rect. 21 13
772 216.02 atmosphere 995.0 90 > th dose independent rect. 21 13
779 216.05 radiation 40.0 30 < th dose independent rect. 4 9
800 216.10 precipitation 0.1 90 < th dose independent rect. 10 11
802 216.10 atmosphere 1005.0 10 > th dose dependent rect. 24 5
803 216.10 precipitation 0.1 90 < th dose dependent rect. 10 11
839 216.24 wind 1.0 90 > th dose independent rect. 10 11
848 216.30 atmosphere 1000.0 10 > th dose independent rect. 11 10
855 216.32 radiation 40.0 30 < th dose dependent rect. 13 15
876 216.36 humidity 90.0 270 > th dose dependent rect. 6 1
887 216.38 temperature 30.0 30 < th dose independent rect. 21 14
926 216.45 humidity 60.0 10 > th dose independent rect. 21 14
929 216.46 wind 1.0 10 > th dose independent rect. 4 1
938 216.47 temperature 20.0 90 < th dose independent rect. 1 3
955 216.49 atmosphere 1005.0 30 > th dose dependent rect. 13 1
994 216.59 temperature 20.0 10 < th dose independent rect. 24 5