Os07g0638100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TolB, C-terminal domain containing protein.
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Os07g0638100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TolB, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.35 | 0.667 | 11.9 | 1.36 | 3.99 | -2.83 | 2.85 | 7.15 | 0.64 | 23.4 | 23.36 | 11 | -- | -- |
| 228.15 | 0.709 | 12 | 0.264 | 4.05 | -2.28 | 1.76 | -- | 0.31 | 23.4 | 23.36 | 11 | -- | -- |
| 231.71 | 0.714 | 12 | 0.762 | 3.98 | -2.66 | -- | 3.85 | 0.484 | 23.4 | 23.36 | 11 | -- | -- |
| 240.91 | 0.728 | 12 | 0.21 | 4.03 | -2.38 | -- | -- | 0.319 | 23.4 | 23.19 | 8 | -- | -- |
| 1038.2 | 1.51 | 11.7 | 1.7 | -- | -5.55 | -- | 4.88 | 1.1 | -- | 21.28 | 4 | -- | -- |
| 309.49 | 0.825 | 12.1 | -0.135 | 4.69 | -- | 2.05 | -- | -0.00679 | 24 | -- | -- | -- | -- |
| 327.69 | 0.848 | 12.1 | -0.217 | 4.68 | -- | -- | -- | -0.0162 | 24 | -- | -- | -- | -- |
| 1056.04 | 1.51 | 11.8 | 0.93 | -- | -5.25 | -- | -- | 0.89 | -- | 20.69 | 2 | -- | -- |
| 242.01 | 0.729 | 12 | -- | 4.05 | -2.32 | -- | -- | 0.288 | 23.4 | 23.2 | 8 | -- | -- |
| 1707.28 | 1.93 | 12 | -0.072 | -- | -- | -- | -- | 0.0483 | -- | -- | -- | -- | -- |
| 328.93 | 0.848 | 12.1 | -- | 4.68 | -- | -- | -- | 0.0079 | 24 | -- | -- | -- | -- |
| 1077.9 | 1.53 | 11.9 | -- | -- | -5.04 | -- | -- | 0.755 | -- | 20.89 | 2 | -- | -- |
| 1707.42 | 1.93 | 12 | -- | -- | -- | -- | -- | 0.0563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 3 | 193.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 6 | 194.17 | temperature | 20 | 10 | > th | dose dependent | sin | 1 | NA |
| 9 | 194.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 45 | 199.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 46 | 199.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 48 | 199.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 61 | 202.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 62 | 202.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 97 | 205.17 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 119 | 206.78 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 12 |
| 126 | 207.08 | temperature | 25 | 90 | > th | dose independent | sin | 1 | NA |
| 151 | 208.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 179 | 209.22 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 18 |
| 184 | 209.31 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 225 | 211.20 | temperature | 25 | 90 | < th | dose independent | sin | 1 | NA |
| 232 | 211.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 239 | 211.57 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 318 | 213.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 403 | 215.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 474 | 217.08 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 603 | 219.22 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 22 |
| 620 | 219.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 656 | 220.09 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 21 |
| 702 | 220.82 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 20 |
| 732 | 221.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 758 | 221.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 841 | 222.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 852 | 222.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 876 | 223.17 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 887 | 223.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 919 | 223.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |