BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0638100 Os07g0638100|AK100429
(659 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0638100 TolB, C-terminal domain containing protein 1238 0.0
Os03g0840200 TolB, C-terminal domain containing protein 428 e-120
Os03g0314500 TolB, C-terminal domain containing protein 243 3e-64
Os03g0403400 TolB, C-terminal domain containing protein 221 1e-57
Os12g0431300 TolB, C-terminal domain containing protein 211 1e-54
Os04g0278101 TolB, C-terminal domain containing protein 171 2e-42
>Os07g0638100 TolB, C-terminal domain containing protein
Length = 659
Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/659 (95%), Positives = 627/659 (95%)
Query: 1 MEPTGTIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQFVDDGGEEVA 60
MEPTGTIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQFVDDGGEEVA
Sbjct: 1 MEPTGTIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQFVDDGGEEVA 60
Query: 61 FVSERGGAAGLFRCRPGPEQRAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSW 120
FVSERGGAAGLFRCRPGPEQRAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSW
Sbjct: 61 FVSERGGAAGLFRCRPGPEQRAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSW 120
Query: 121 AAVYATEIGSKETVRVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEXXXXX 180
AAVYATEIGSKETVRVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETE
Sbjct: 121 AAVYATEIGSKETVRVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVFR 180
Query: 181 XXXXXXXXXXXXXXXWPTWHGEGTVFFHRVADDGWWSVFRVDVSPETLEPTGGERRVTPP 240
WPTWHGEGTVFFHRVADDGWWSVFRVDVSPETLEPTGGERRVTPP
Sbjct: 181 AADPARRVVVVGRGGWPTWHGEGTVFFHRVADDGWWSVFRVDVSPETLEPTGGERRVTPP 240
Query: 241 GLHCFTPAAVGRGGGGRWIAVATRRKGRAQRHVELFDLETESFSPLTERLNPELHHYNPF 300
GLHCFTPAAVGRGGGGRWIAVATRRKGRAQRHVELFDLETESFSPLTERLNPELHHYNPF
Sbjct: 241 GLHCFTPAAVGRGGGGRWIAVATRRKGRAQRHVELFDLETESFSPLTERLNPELHHYNPF 300
Query: 301 FSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLAMNG 360
FSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLAMNG
Sbjct: 301 FSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLAMNG 360
Query: 361 DFFKTPGVTILRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRIARL 420
DFFKTPGVTILRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRIARL
Sbjct: 361 DFFKTPGVTILRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRIARL 420
Query: 421 EFDAGELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRSGHKNLYIVDAAH 480
EFDAGELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRSGHKNLYIVDAAH
Sbjct: 421 EFDAGELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRSGHKNLYIVDAAH 480
Query: 481 GEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSLIAFSSNRHDPTNAAVFSIYLVRPDGSGL 540
GEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSLIAFSSNRHDPTNAAVFSIYLVRPDGSGL
Sbjct: 481 GEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSLIAFSSNRHDPTNAAVFSIYLVRPDGSGL 540
Query: 541 RRVHVAGPAGSAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGDLYVC 600
RRVHVAGPAGSAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGDLYVC
Sbjct: 541 RRVHVAGPAGSAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGDLYVC 600
Query: 601 RLDGSGLVRLTCNAYENGTXXXXXXXXXXXXLESLSLGPGAGDESLGEFDEPLWLTCDV 659
RLDGSGLVRLTCNAYENGT LESLSLGPGAGDESLGEFDEPLWLTCDV
Sbjct: 601 RLDGSGLVRLTCNAYENGTPAWGPASSPAAGLESLSLGPGAGDESLGEFDEPLWLTCDV 659
>Os03g0840200 TolB, C-terminal domain containing protein
Length = 688
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 273/645 (42%), Positives = 368/645 (57%), Gaps = 62/645 (9%)
Query: 5 GTIVFATVGVTNFGFDVFSAAVPLPPMEED----AERRHTDGVSVNFNAQFVDDGGEEVA 60
GTIVF T+G + + FD+FS +PL P + AE R TDGVSVN+N F + +
Sbjct: 28 GTIVFTTLGRSRYEFDIFS--LPLAPSPHNPAAAAELRLTDGVSVNYNGNFAP-ASDSIL 84
Query: 61 FVSERGGAAGLFRCRPGPEQRAE-----------------PLPTVEGSLFHDRPTVR--G 101
FVSER G+ L+ P P R E PL E DRP++ G
Sbjct: 85 FVSERNGSLNLY-LSPVPSSRREALESASSSSSSAAATISPLLPWEPIALKDRPSLTPDG 143
Query: 102 GRLYFVSAHEQPPAPFRSWAAVYATEIGSKETVRVSPPGVVDMSPAVSDSGELVAVASYG 161
RL +VS P SWAAVY+TE+ + T R++P GV D SPAVS SGE A AS G
Sbjct: 144 SRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLGVADFSPAVSPSGEWTAAASPG 203
Query: 162 DRPWAFDFRVLETEXXXXXXXXXXXXXXXXXXXXWPTWHGEGTVFFHRVADDGWWSVFRV 221
W+ + L T+ WP+W E TVFFHR DGW+ V+R
Sbjct: 204 AAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGGWPSWADETTVFFHRRDSDGWYGVYRA 263
Query: 222 DVSP--ETLEPTGGERRVTPPGLHCFTPAAVGRGGGGRWIAVATRRKGRAQRHVELFDLE 279
++S + +E ER +TPPG H FTPAA G +AVATRR G RH+E+ D+
Sbjct: 264 EISVTGDGVEAASVER-ITPPGFHAFTPAA--SPGAPGLVAVATRRAGSDYRHIEVIDVS 320
Query: 280 TE---SFSPLTERLNPELHHYNPFFSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVS- 335
++ ++ +T + P +HH+NPF SP G RVGYHR RG G GDS + L+ ++SP S
Sbjct: 321 SDGKNAYFEVTRPVAPRVHHFNPFISPDGARVGYHRCRGRG-NGDSPL-LLENIKSPGSP 378
Query: 336 -SLRMLRVYGTFPSFSPDAAHLAMNGDFFKTPGVTILRSDGAKRWVLTREPNLFYTSWSP 394
+ + R+ G+FPSFS D +A F PG+ ++ SDG+ N F TSW
Sbjct: 379 DTFSLFRIDGSFPSFSHDGKKIA----FVGLPGMYVVNSDGSGGRRKIFSGNAFSTSWDW 434
Query: 395 AESGVIFTSMGPIFETTKATVRIARLEFDAGELTTGRDEVAATLKVLTRPEAGNDAFPAV 454
GV++TS+GP F + V + + L DE ++K LT N+AFP+
Sbjct: 435 KRKGVVYTSIGPDFASETTEVDVVAIS-----LGDDDDESTISMKKLTV-GGENNAFPSP 488
Query: 455 SPCGKWVVFRSGRSGHKNLYIVDAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSLIA 514
SP GKWVVFRSGRSG+KNLYI+DA GE G IRRLT+G W DTM +WSPDG IA
Sbjct: 489 SPDGKWVVFRSGRSGNKNLYIIDAEDGE-----AGGIRRLTEGPWSDTMCNWSPDGEWIA 543
Query: 515 FSSNRHDPTNAAVFSIYLVRPDGSGLRRVHVAGPAGSAAADRERINHVCFSPDSRWLLFT 574
F+S+RH P + + F+IY+V P+G+GLRRV +G +G R NH FSPDS+ L+FT
Sbjct: 544 FASDRHAPGSGS-FAIYMVHPNGTGLRRVVHSGGSG-------RTNHPWFSPDSKSLVFT 595
Query: 575 ANFGGVMAEPISAPNQFQPYGDLYVCRLDGSGLVRLTCNAYENGT 619
+++ V AEP+S P+ +QPYG+++ +DGS + RLT N++E+GT
Sbjct: 596 SDYAAVSAEPVSNPHHYQPYGEIFTVDIDGSNIRRLTHNSFEDGT 640
>Os03g0314500 TolB, C-terminal domain containing protein
Length = 730
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 200/625 (32%), Positives = 291/625 (46%), Gaps = 73/625 (11%)
Query: 35 AERRHTDGVSVNFNAQFVDDGGEEVAFVSERGGAAGLFRCRPGPEQRAEPLPTVEGSLFH 94
+ER H + +++ +F DDG +V +++ G GLF R E + G
Sbjct: 87 SEREH-NLETLHIALRFNDDGEVQVFSLADAYGGDGLFSG-----ARMEDSGCIAGGYEV 140
Query: 95 DRPTVRGGRLYFVSAHEQPPAPFRSWAAVYATEIGSKETVRVSPPGVVDMSPAVSDSGEL 154
D TV L +VS E W Y T + + ET R++PPG D+SP+VS SG+
Sbjct: 141 DGRTV-DHYLVYVSTKEPVRERRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKK 199
Query: 155 VAVASYGDRPWAFDFRVLETEXXXXXXXX-XXXXXXXXXXXXWPTWHGEGTVFFHRVADD 213
VAVASY + W + + L T WP+W E +FFHR D
Sbjct: 200 VAVASYQGKKWDGEIKNLNTNIYVMSLENPSQDRERVIENGGWPSWGSEDVIFFHRKDGD 259
Query: 214 G---WWSVFRVDVSPETLEPTGGERRVTPPGLHCFTPAAVGRGGGGRWIAVATRRKG--- 267
G W VFR +S TG RVTP TPAA+ R A R+K
Sbjct: 260 GENSCWGVFRHTLS------TGETVRVTPAAFDSVTPAAIDE---TRVAVAAIRQKSEFS 310
Query: 268 ----RAQ-RHVELFDLET-ESFSPLTERLNPELHHYNPFFSPSGDRVGYHRFRGAGAR-G 320
AQ RH+E+FD+ + E +T P+ H+NPF G +GYHR + + G
Sbjct: 311 DVRVEAQYRHIEVFDMRSPEQPMQITRNTRPKADHFNPFVMDGGKFIGYHRCKSELLQHG 370
Query: 321 DSVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLAMNGDFFKTPGVTILRSDGAKRWV 380
D + +QSP + + RV G FP+FS D + LA + FK+ V + S G +
Sbjct: 371 DDLPRKFHKLQSPHEDVGVFRVSGVFPTFSKDGSQLAFVDNEFKS--VWLADSQGMRVVF 428
Query: 381 LTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRIARLEFDAGELTTGRDEVAATLKV 440
T P+ ++ ++ +++ MGP F+ ++ T+ I + ++TG D + L
Sbjct: 429 KTDGPDSVFSPLWNSKKDILYVCMGPSFKASE-TLEIHSIH----NVSTG-DRKSRQLTF 482
Query: 441 LTRPEAGNDAFPAVSPCGKWVVFRSGRSG----HKNLYIV-DAAHGEDVGAGEGTIRRLT 495
N+AFP+ +P G VFRS R G KNLYI+ DA GE + T+ R+T
Sbjct: 483 ----GGFNNAFPSTNPDGTKFVFRSTRDGGAKYSKNLYIMEDADAGEGEDGSQSTVTRMT 538
Query: 496 DGEWIDTMPSWSPDGSLIAFSSNRHDPTNA---------AVFSIYLVRPDGSGLRRVHVA 546
GEW DT WSP+G I FSSNR P +A F++YL+ + RV +
Sbjct: 539 AGEWTDTHCQWSPNGKWIVFSSNRDRPADAPERDHGLDPGYFAVYLMDVASRSVVRVIRS 598
Query: 547 GPAGSAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAP---NQFQPYGDLYVCRLD 603
G + +NH FSPD R + T++ V A+P+S P + +PYGD++ +D
Sbjct: 599 GYDVAG-----HVNHPVFSPDGRSIAVTSDLAAVTADPMSLPLFLHSVRPYGDIFTVDID 653
Query: 604 GS---------GLVRLTCNAYENGT 619
G VR+T + YEN T
Sbjct: 654 PDDMARNEDVEGFVRVTHSRYENST 678
>Os03g0403400 TolB, C-terminal domain containing protein
Length = 744
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 227/717 (31%), Positives = 305/717 (42%), Gaps = 130/717 (18%)
Query: 2 EPTGTIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQFVD-------- 53
E G+I F DVFS V PP E TDGVS N + + +
Sbjct: 4 ESRGSIAFFATYRPPVPLDVFSCPVAPPPSSPRDELHLTDGVSYNHSCRPIPAAALRALL 63
Query: 54 --------------DGGE--EVAFVSERGGAAGL------FRCRPGPEQRAEPLPTV--- 88
D G + FVSER +GL R G + + L +
Sbjct: 64 QRPKLASEATTADVDAGRITGLVFVSERD--SGLETLHVALRFDGGKQVKVFGLADIFGA 121
Query: 89 ----EGSLFHDRPTVRGG----------RLYFVSAHEQPPAPFRSWAAVYATEIGSKETV 134
G D GG L +VS E A W VY T + + ET
Sbjct: 122 GGDFSGVRMEDSGCFGGGYRERGRAVDHTLVYVSTREPVAARRSPWTVVYGTNLRTGETA 181
Query: 135 RVSPPGVVDMSPAVSDSGELVAVASYGDRP--WAFDFRVLETEXXXXXXXX--XXXXXXX 190
R++P G D+SPAVS SG+ VAVAS+ +P W + L T+
Sbjct: 182 RLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWDGEIEDLRTDIYVMNVHKPPLGRTGPV 241
Query: 191 XXXXXWPTWHGEGTVFFHRVADDGWWSVFRVDVSPETLEPTGGERRVTPPGLHCFTPAAV 250
WPTW + +FFHR W VFR +S TG E RVTP TPAA+
Sbjct: 242 VKNAGWPTWGSDDVIFFHRRVGTT-WGVFRFSMS------TGEEARVTPEEFDAVTPAAI 294
Query: 251 GRGGGGRWIAVAT-RRKGR--------AQRHVELFDLET-ESFSPLTERLNPELHHYNPF 300
+AVAT RRK + RH+E+FD+ + E +T++ P+ H+NPF
Sbjct: 295 SETK----VAVATIRRKSQFSDVRVEEQYRHIEIFDVASPEQPVKITQKTRPKTDHFNPF 350
Query: 301 FSPSGDRVGYHRFR------GAGARGDSVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAA 354
G R+GYHR + G G SV +QSP + + RV G P+ S D +
Sbjct: 351 VLDGGSRIGYHRCKSEQLHQNNGGGGSSVANNFHKLQSPHKDVGLFRVSGVCPTISKDGS 410
Query: 355 HLAMNGDFFKTPGVTILRSDGAKRWVLTREPN-LFYTSWSPAES-GVIFTSMGPIFETTK 412
LA + FK V + S G + + PN +F T+W+ + ++ +GP F K
Sbjct: 411 KLAFVDNEFK--AVWLADSHGLRVVYEKKGPNSVFSTAWNQNTALDTLYVCVGPSFSADK 468
Query: 413 ATVRIARLEFDAGELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRS---- 468
A + A GR + T A N+AFP+ SP G +VFRS R
Sbjct: 469 PLQIYAIHDVSA---LGGRQQRRLTAG------ASNNAFPSSSPDGGRLVFRSTRDGGGG 519
Query: 469 --GHKNLYIV-DAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSP-DGS-LIAFSSNRHDPT 523
HKNLY++ DAA GE G + RLT G W DT SWSP +GS I FSS R P
Sbjct: 520 GRRHKNLYVMEDAAVGE---FGTSKVTRLTSGAWTDTHCSWSPREGSDWIVFSSTRDKPA 576
Query: 524 NA---------AVFSIYLVRPDGSGLRRVHVAGPAGSAAADRERINHVCFSPDSRWLLFT 574
A F+++LVR + V V A S A +NH FSPD R + T
Sbjct: 577 AAPADDNGLDPGYFAVFLVRASDPTV-VVRVVRSADSVAG---HVNHPVFSPDGRSIAVT 632
Query: 575 ANFGGVMAEPISAP---NQFQPYGDLYVCRLDGSGLV---------RLTCNAYENGT 619
A+ V A+PIS P + +PYGD++ +D + R+T + YEN T
Sbjct: 633 ADLAAVSADPISLPLFLHSVRPYGDIFTVDIDPDDISKNRDVRAFHRVTHSRYENST 689
>Os12g0431300 TolB, C-terminal domain containing protein
Length = 777
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 187/621 (30%), Positives = 266/621 (42%), Gaps = 116/621 (18%)
Query: 81 RAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSWAAVYATEIGSKETVRVSPPG 140
R E V G R TV G L +VS A W VY T++ +T R++P G
Sbjct: 135 RMEDSGCVAGGFKVGRTTV-GHSLVYVSTKAPVKARRTPWTVVYRTDLADGKTERLTPLG 193
Query: 141 VVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEXXXXXXXXXXXXXXXXXXXX----W 196
D+SPAVS SG++VAVA++ W + L+T+ W
Sbjct: 194 QYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQGRSDRKVLIKDGGW 253
Query: 197 PTWHGEGTVFFHRVAD------DGWWSVFRVDVSPETLEPTGGERRVTPPGLHCFTPAAV 250
PTW + +FFHR D W VFR D++ G E RVT + TPAA+
Sbjct: 254 PTWGSDNVIFFHRGFDTTPPSNTARWGVFRFDIA------AGKEERVTDESIDAMTPAAI 307
Query: 251 GRGGGGRWIAVATRRKGRAQ------------RHVELFDLETESFSPLTERLNPELHHYN 298
+AVAT R+ Q RH+E+FD +++ P+T++ PE HYN
Sbjct: 308 SETQ----VAVATVREKSKQVLMKVERVVTQYRHIEIFDTASKTSVPITQKTRPEGDHYN 363
Query: 299 PFFSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVSSLR----------------MLRV 342
PF G RVGYHR R D ++ +P +S++ + RV
Sbjct: 364 PFVLDGGTRVGYHR-----CRTDKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFRV 418
Query: 343 YGTFPSFSPDAAHLAMNGDFFKTPGVTILRSDGAKRWVLTR---EPNLFYTSWSPAES-G 398
G FPS S + LA + FK + +DG V+ + ++F TSW+ +
Sbjct: 419 TGVFPSVSKNGKKLAFVDNEFK----AVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLD 474
Query: 399 VIFTSMGPIFETTKATVRIARLEFDAGELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCG 458
++ GP F K V+I R+ R++ E N AFP+ + G
Sbjct: 475 TLYVCEGPAFSIDKP-VQIMRIP------NVSREDYENMETFPLTDEEYNCAFPSTNAEG 527
Query: 459 KWVVFRSGRS-------GHKNLYIVDAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGS 511
+VFRS R+ HKNLYI+DA GE G + LTDG W DT SWSP
Sbjct: 528 TKLVFRSSRNRVAGGERQHKNLYIIDAEKGEAAG-----VVPLTDGPWTDTHCSWSPREG 582
Query: 512 L--IAFSSN----------RHDP-----TNAAVFSIYLVRPDGSGLRRVHVAGPA---GS 551
I FSS + +P + F++YLV + +++ V P S
Sbjct: 583 CDWIVFSSTGRPEKDIVKGKDEPEKDHGLDPGYFAVYLV--NAKDIKKGEVPVPVRVIHS 640
Query: 552 AAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAP---NQFQPYGDLYVCRL------ 602
A INH FSPD + ++F A+ V A+PIS P + +PYGD++ L
Sbjct: 641 APTIAGHINHPVFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDM 700
Query: 603 ----DGSGLVRLTCNAYENGT 619
D R+T + YE T
Sbjct: 701 AKNRDIQEFHRITHSRYEYST 721
>Os04g0278101 TolB, C-terminal domain containing protein
Length = 378
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 202/408 (49%), Gaps = 88/408 (21%)
Query: 218 VFRVDVSPETLEPTGGERRVTPPGLHCFTPAAVGRGGGGRWIAVATRRKGRAQRHVELFD 277
+ + V+ + +E ER +TP G H FTPAA G +AVATR G RH+E+ D
Sbjct: 6 IQHISVTDDRVEAASVER-ITPRGFHAFTPAA--SPGAPGLVAVATRLAGSDYRHIEVID 62
Query: 278 L--ETESFSPLTERLNPELHHYNPFFSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPV- 334
+ + ++ +T + P +H +NPF S G RVGYHR G G GDS + L+ ++SPV
Sbjct: 63 MSDDKNAYFEVTRPVAPRVHRFNPFISLDGARVGYHRCWGRG-NGDSPL-LLENIKSPVP 120
Query: 335 -SSLRMLRVYGTFPSFSPDAAHLAMNGDFFKTPGVTILRSDGAKRWVL-TREPNLFYTSW 392
+ + R+ G+FP A RS G + ++L R P++
Sbjct: 121 ADTFSLFRIDGSFPPSRTTARRS---------------RSSGCRGYLLRERLPDVVGLE- 164
Query: 393 SPAESGVIFTSMGPIFETTKATVRIARLEFDAGELTTGRDE-VAATLKVLTRPEAGNDAF 451
E I TS+GP F I E D ++ G D+ ++K LT + N+AF
Sbjct: 165 --EERRDIHTSIGPDFA-------IESTEVDVVAISLGDDDDKTISMKKLTVGDE-NNAF 214
Query: 452 PAVSPCGKWVVFRSGRSGHKNLYIVDAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGS 511
P+ P GKW+ GE G IRRLT+G W DTM +WSPD
Sbjct: 215 PSPPPDGKWL------------------DGE-----AGGIRRLTEGPWSDTMCNWSPDDE 251
Query: 512 LIAFSSNRHDPTNAAVFSIYLVRPDGSGLRRVHVAGPAGSAAADRERINHVCFSPDSRWL 571
IAF+S+RH P + + F+I +V P+G+G DS+ L
Sbjct: 252 WIAFASDRHAPGSGS-FAI-MVHPNGTG--------------------------SDSKSL 283
Query: 572 LFTANFGGVMAEPISAPNQFQPYGDLYVCRLDGSGLVRLTCNAYENGT 619
+FT+++ V AEP+S P+ +QPYG++Y +DGS + RLT N++E+GT
Sbjct: 284 VFTSDYAAVSAEPVSNPHHYQPYGEIYTVDIDGSNIRRLTHNSFEDGT 331
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,178,559
Number of extensions: 1350498
Number of successful extensions: 3399
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 3334
Number of HSP's successfully gapped: 6
Length of query: 659
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 552
Effective length of database: 11,448,903
Effective search space: 6319794456
Effective search space used: 6319794456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)