BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0428000 Os12g0428000|AK063419
(162 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0428000 Rhodanese-like domain containing protein 308 9e-85
Os02g0157600 Rhodanese-like domain containing protein 146 5e-36
Os04g0249600 Rhodanese-like domain containing protein 121 2e-28
Os02g0102300 Similar to Thiosulfate sulfurtransferase (EC 2... 109 7e-25
Os06g0725000 Similar to Ntdin 81 4e-16
>Os12g0428000 Rhodanese-like domain containing protein
Length = 162
Score = 308 bits (790), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 150/162 (92%), Positives = 150/162 (92%)
Query: 1 RDQRATQPPHPAKRRSTDRSIDMGSLXXXXXXXXXXXXDCSKQEETERVMRSVDAEEACA 60
RDQRATQPPHPAKRRSTDRSIDMGSL DCSKQEETERVMRSVDAEEACA
Sbjct: 1 RDQRATQPPHPAKRRSTDRSIDMGSLRGGGGGGGGGRGDCSKQEETERVMRSVDAEEACA 60
Query: 61 LLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPHFVQQVAALYHAHDHI 120
LLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPHFVQQVAALYHAHDHI
Sbjct: 61 LLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPHFVQQVAALYHAHDHI 120
Query: 121 IVGCRSGVRSKLATADLVAAGFKNVRILEGGYLSLLRAANQQ 162
IVGCRSGVRSKLATADLVAAGFKNVRILEGGYLSLLRAANQQ
Sbjct: 121 IVGCRSGVRSKLATADLVAAGFKNVRILEGGYLSLLRAANQQ 162
>Os02g0157600 Rhodanese-like domain containing protein
Length = 139
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Query: 53 VDAEEACALLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPHFVQQVAA 112
VDA E L+SSG H YLDVR+ +DFDK H GARN+ YYLSVTP KEKNPHFV +VA+
Sbjct: 25 VDAGEVRELMSSG-HHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPHFVDEVAS 83
Query: 113 LYHAHDHIIVGCRSGVRSKLATADLVAAGFKNVRILEGGYLSLLRAANQQ 162
L+ +H+IV C +GVRS+LAT DL+ AGFKNVR L+GGY S LR+ +QQ
Sbjct: 84 LFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFLRSESQQ 133
>Os04g0249600 Rhodanese-like domain containing protein
Length = 138
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 52 SVDAEEACALLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPHFVQQVA 111
+V A L+ SG H YLDVR E+F KGHV + NVP+ L TP+ KEKN F++QVA
Sbjct: 20 TVGVTAASHLVGSGGHSYLDVRTEEEFKKGHVENSLNVPF-LFFTPQGKEKNTKFIEQVA 78
Query: 112 ALYHAHDHIIVGCRSGVRSKLATADLVAAGFKNVRILEGGYLS 154
Y D+IIVGC SGVRS+LA+ADL+AAGFKNV+ +EGGY++
Sbjct: 79 LHYDKEDNIIVGCLSGVRSELASADLIAAGFKNVKNMEGGYMA 121
>Os02g0102300 Similar to Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)
(Senescence- associated protein) (Sulfurtransferase
protein 16) (AtStr16)
Length = 137
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 45 ETERVMRSVDAEEACALLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNP 104
E+ + +VD A L++S H+Y+DVR E+ +KGH+ + NVP+ VTP+ KEKNP
Sbjct: 13 ESPVPVVTVDVAAASDLITSAGHRYVDVRTEEEMNKGHLHNSLNVPFMF-VTPQGKEKNP 71
Query: 105 HFVQQVAALYHAHDHIIVGCRSGVRSKLATADLVAAGFKNVRILEGGYLSLL 156
FV+Q ++L +H++VGC+SG RS+LA DL+ AGFKNV+ + GGY + L
Sbjct: 72 LFVEQFSSLVSKEEHVVVGCQSGKRSELACVDLLEAGFKNVKNMGGGYAAWL 123
>Os06g0725000 Similar to Ntdin
Length = 116
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 49 VMRSVDAEEACALLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPHFVQ 108
V RSV A L +G H+YLDVR +F GH GA N+PY + T KN HF++
Sbjct: 3 VPRSVPVRVAHELQQAG-HRYLDVRTEGEFAGGHPVGAVNIPY-MYKTGSGLTKNTHFLE 60
Query: 109 QVAALYHAHDHIIVGCRSGVRSKLATADLVAAGFKNVRILEGGY 152
+V+ + D IIVGC+SG RS +A ++L +AGF V + GG+
Sbjct: 61 KVSTTFGKEDEIIVGCQSGKRSLMAASELCSAGFTAVTDIAGGF 104
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,243,149
Number of extensions: 179939
Number of successful extensions: 406
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 5
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)