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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0428000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rhodanese-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0415) R2 : 0.0742
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.509 (0.101) R2dC : 0.0515 R2C : 0.0468
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.283 (0.0875) R2dN8 : 0.0274 R2N8 : 0.0227
σ : 0.784
deviance : 280.73
__
_____
C
peak time of C : 2.01
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.74 0.744 3.46 -0.856 0.502 2.12 -0.929 4.92 0.247 2.09 0.2495 1452 -- --
257.39 0.747 3.36 -0.435 0.556 0.946 -0.584 -- 0.349 1.59 1.77 1423 -- --
252.91 0.741 3.46 -0.832 0.61 2.1 -- 4.83 0.25 1.83 0.2497 1425 -- --
259.71 0.751 3.37 -0.441 0.533 0.918 -- -- 0.336 2.08 1.81 1435 -- --
264.74 0.758 3.42 -0.667 -- 2.17 -- 4.04 0.314 -- 0.2491 1503 -- --
266.38 0.765 3.4 -0.669 0.521 -- -0.964 -- 0.206 1.91 -- -- -- --
269.95 0.769 3.39 -0.64 0.521 -- -- -- 0.211 2.04 -- -- -- --
259.16 0.75 3.37 -0.462 -- 1.26 -- -- 0.339 -- 2.223 1699 -- --
264.06 0.757 3.35 -- 0.489 1.17 -- -- 0.4 2.18 1.27 1448 -- --
286.27 0.791 3.39 -0.618 -- -- -- -- 0.224 -- -- -- -- --
280.73 0.784 3.38 -- 0.509 -- -- -- 0.283 2.01 -- -- -- --
264.47 0.757 3.35 -- -- 1.37 -- -- 0.393 -- 1.39 1677 -- --
296.35 0.804 3.37 -- -- -- -- -- 0.292 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.57 radiation 1.0 30 > th dose dependent rect. 6 1
2 244.81 atmosphere 1005.0 30 > th dose dependent rect. 6 1
3 245.36 wind 3.0 30 < th dose dependent rect. 6 1
5 245.62 radiation 1.0 720 < th dose dependent rect. 8 8
6 245.70 wind 9.0 1440 < th dose independent rect. 7 1
7 245.70 temperature 10.0 1440 > th dose independent rect. 7 1
11 245.70 temperature 30.0 1440 < th dose independent rect. 7 1
15 245.70 humidity 50.0 1440 > th dose independent rect. 7 1
20 245.70 atmosphere 995.0 1440 > th dose independent rect. 7 1
21 245.70 atmosphere 1015.0 1440 < th dose independent rect. 7 1
22 245.70 temperature 10.0 1440 > th dose independent rect. 8 23
25 245.84 radiation 1.0 720 < th dose dependent rect. 11 6
26 245.91 temperature 25.0 10 > th dose independent rect. 6 1
27 245.92 humidity 80.0 14400 > th dose independent rect. 22 5
34 246.07 humidity 90.0 30 < th dose independent rect. 6 1
35 246.07 radiation 1.0 720 < th dose independent rect. 11 5
36 246.13 radiation 1.0 720 < th dose dependent rect. 13 3
39 246.20 radiation 1.0 30 > th dose independent rect. 6 1
47 246.32 wind 3.0 30 < th dose independent rect. 6 1
49 246.40 radiation 1.0 720 < th dose dependent rect. 15 1
55 246.51 atmosphere 1005.0 30 > th dose independent rect. 6 1
58 246.77 humidity 80.0 30 > th dose independent rect. 6 1
61 246.83 wind 1.0 30 > th dose independent rect. 6 1
62 246.85 humidity 50.0 30 > th dose dependent rect. 6 1
66 246.87 temperature 10.0 30 > th dose dependent rect. 6 1
70 246.88 temperature 10.0 30 > th dose independent rect. 6 1
72 246.88 temperature 30.0 30 < th dose independent rect. 6 1
73 246.88 humidity 50.0 30 > th dose independent rect. 6 1
77 246.88 atmosphere 1015.0 30 < th dose independent rect. 6 1
78 246.88 radiation 20.0 30 < th dose independent rect. 6 1
81 246.88 precipitation 0.1 30 < th dose independent rect. 6 1
83 246.88 temperature 10.0 30 > th dose independent rect. 7 23
84 246.88 precipitation 0.1 30 < th dose dependent rect. 6 1
89 247.06 radiation 1.0 1440 > th dose independent rect. 4 1
99 247.06 radiation 1.0 1440 > th dose dependent rect. 4 1
118 247.38 precipitation 0.1 43200 > th dose dependent rect. 5 14
121 247.48 radiation 10.0 14400 < th dose dependent rect. 7 1
128 247.72 radiation 40.0 30 < th dose dependent rect. 6 1
131 247.76 radiation 20.0 14400 > th dose independent rect. 16 2
144 247.76 temperature 30.0 30 < th dose dependent rect. 6 1
147 247.78 radiation 40.0 14400 > th dose independent sin 14 NA
149 247.81 humidity 80.0 14400 < th dose dependent rect. 1 1
150 247.81 humidity 80.0 14400 < th dose dependent rect. 1 3
152 247.84 radiation 40.0 14400 > th dose independent rect. 14 2
170 247.86 humidity 90.0 14400 < th dose dependent rect. 24 6
194 247.93 humidity 80.0 14400 < th dose independent rect. 22 5
209 248.07 precipitation 0.1 43200 > th dose independent rect. 6 13
212 248.11 precipitation 0.1 43200 < th dose independent rect. 6 13
213 248.11 precipitation 0.1 43200 < th dose dependent rect. 6 13
215 248.13 humidity 80.0 14400 > th dose independent rect. 17 12
226 248.17 radiation 1.0 720 < th dose independent rect. 11 16
227 248.18 radiation 1.0 720 < th dose dependent rect. 11 16
253 248.45 radiation 40.0 14400 > th dose independent rect. 11 5
292 248.50 radiation 10.0 14400 < th dose dependent rect. 6 3
297 248.54 atmosphere 995.0 43200 > th dose independent rect. 13 10
299 248.55 atmosphere 995.0 43200 < th dose independent rect. 13 10
302 248.59 humidity 80.0 14400 < th dose independent rect. 22 1
305 248.62 humidity 80.0 14400 < th dose independent rect. 18 10
307 248.64 humidity 80.0 14400 < th dose independent rect. 18 8
314 248.67 atmosphere 995.0 43200 > th dose independent rect. 12 12
319 248.70 atmosphere 995.0 43200 > th dose independent sin 18 NA
326 248.73 precipitation 0.1 43200 < th dose independent rect. 5 16
327 248.73 precipitation 0.1 43200 < th dose dependent rect. 5 16
328 248.74 radiation 20.0 14400 < th dose independent rect. 10 1
336 248.75 precipitation 0.1 43200 > th dose independent rect. 5 16
344 248.80 wind 9.0 43200 > th dose dependent rect. 13 1
351 248.86 atmosphere 995.0 43200 < th dose independent rect. 12 12
358 248.92 atmosphere 995.0 43200 < th dose independent sin 18 NA
372 248.96 radiation 1.0 4320 < th dose dependent rect. 8 9
375 248.98 radiation 1.0 720 < th dose dependent rect. 5 13
379 248.99 radiation 1.0 720 > th dose independent rect. 10 9
389 249.00 humidity 90.0 30 < th dose dependent rect. 6 1
395 249.05 humidity 80.0 14400 > th dose independent sin 12 NA
401 249.06 atmosphere 995.0 43200 > th dose independent rect. 11 14
409 249.11 radiation 10.0 14400 < th dose dependent rect. 18 16
444 249.17 radiation 10.0 30 > th dose dependent rect. 17 14
445 249.18 radiation 20.0 14400 > th dose independent rect. 10 1
453 249.21 radiation 10.0 30 > th dose independent rect. 17 14
472 249.30 radiation 20.0 14400 > th dose independent sin 16 NA
477 249.31 atmosphere 995.0 30 > th dose independent rect. 7 23
478 249.31 radiation 10.0 14400 < th dose dependent rect. 4 6
480 249.31 radiation 10.0 14400 < th dose dependent rect. 24 10
485 249.31 radiation 10.0 14400 < th dose dependent rect. 15 19
486 249.32 radiation 20.0 14400 > th dose independent rect. 10 7
517 249.34 humidity 80.0 14400 > th dose independent rect. 19 1
544 249.40 radiation 30.0 14400 < th dose dependent rect. 9 2
550 249.42 precipitation 0.1 43200 > th dose dependent sin 1 NA
572 249.48 humidity 80.0 14400 < th dose independent rect. 19 1
598 249.52 radiation 1.0 1440 > th dose independent rect. 9 1
654 249.59 radiation 40.0 43200 > th dose dependent rect. 15 17
687 249.65 radiation 1.0 720 < th dose dependent sin 20 NA
706 249.67 humidity 80.0 14400 < th dose independent sin 12 NA
764 249.69 radiation 10.0 14400 > th dose independent rect. 14 20
765 249.69 radiation 40.0 43200 > th dose dependent rect. 15 1
782 249.70 radiation 1.0 720 < th dose independent sin 20 NA
783 249.70 humidity 90.0 720 > th dose independent rect. 11 2
785 249.70 atmosphere 1015.0 30 < th dose dependent rect. 6 1
789 249.71 temperature 25.0 30 > th dose independent rect. 1 6
799 249.72 radiation 10.0 14400 < th dose dependent sin 10 NA
827 249.75 humidity 90.0 720 > th dose dependent rect. 11 2
836 249.78 precipitation 0.1 43200 > th dose dependent rect. 17 20
837 249.78 precipitation 0.1 43200 > th dose dependent rect. 20 22
839 249.79 radiation 40.0 14400 > th dose independent no NA NA
857 249.79 radiation 40.0 14400 > th dose independent rect. 7 9