Os06g0725000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ntdin.
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Os06g0725000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ntdin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 254.31 | 0.749 | 3.24 | -0.921 | 0.291 | 1.83 | -1.66 | -2.18 | 0.851 | 6.53 | 5.433 | 1527 | 15.9 | -- |
| 260.1 | 0.751 | 3.25 | -1.11 | 0.301 | 2 | -1.44 | -- | 0.839 | 6.33 | 4.283 | 1527 | 16 | -- |
| 260.82 | 0.752 | 3.24 | -0.933 | 0.266 | 1.8 | -- | -1.85 | 0.849 | 5.6 | 5.201 | 1519 | 16.2 | -- |
| 264.93 | 0.758 | 3.26 | -1.15 | 0.294 | 1.97 | -- | -- | 0.803 | 5.69 | 4.26 | 1527 | 16.1 | -- |
| 263.83 | 0.757 | 3.24 | -0.933 | -- | 1.73 | -- | -1.89 | 0.865 | -- | 5.07 | 1507 | 16.8 | -- |
| 319.88 | 0.838 | 3.34 | -1.41 | 0.159 | -- | -1.56 | -- | 0.477 | 5.36 | -- | -- | -- | -- |
| 325.25 | 0.845 | 3.33 | -1.42 | 0.179 | -- | -- | -- | 0.483 | 2.97 | -- | -- | -- | -- |
| 268.43 | 0.763 | 3.26 | -1.08 | -- | 1.92 | -- | -- | 0.818 | -- | 3.989 | 1519 | 17 | -- |
| 293.51 | 0.798 | 3.28 | -- | 0.281 | 2.46 | -- | -- | 0.857 | 5.56 | 3.099 | 1467 | 18.2 | -- |
| 327.1 | 0.845 | 3.33 | -1.41 | -- | -- | -- | -- | 0.487 | -- | -- | -- | -- | -- |
| 378.32 | 0.91 | 3.3 | -- | 0.151 | -- | -- | -- | 0.641 | 2.91 | -- | -- | -- | -- |
| 292.43 | 0.796 | 3.22 | -- | -- | 2.67 | -- | -- | 1.01 | -- | 3.088 | 1455 | 18.5 | -- |
| 379.64 | 0.909 | 3.3 | -- | -- | -- | -- | -- | 0.644 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 257.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 16 |
| 3 | 258.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 6 | 259.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 16 | 260.55 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 17 | 260.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 33 | 261.56 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 42 | 261.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 46 | 262.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 60 | 262.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 61 | 262.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 4 |
| 73 | 262.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 90 | 263.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 96 | 263.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 105 | 263.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 159 | 265.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 160 | 265.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 174 | 266.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 181 | 266.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 182 | 266.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 183 | 266.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 187 | 266.60 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 243 | 267.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 264 | 267.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 265 | 267.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 285 | 267.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 378 | 269.53 | radiation | 10 | 1440 | > th | dose independent | sin | 0 | NA |
| 379 | 269.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 380 | 269.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 391 | 269.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 398 | 269.81 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 405 | 269.92 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 444 | 270.34 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 539 | 271.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 577 | 271.76 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 664 | 271.81 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 666 | 271.84 | humidity | 60 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 698 | 272.11 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 709 | 272.37 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 735 | 272.62 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 813 | 273.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 851 | 273.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 874 | 273.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 883 | 273.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 896 | 273.57 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |