BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0725000 Os06g0725000|AK111790
         (116 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35770.1  | chr4:16945073-16945983 FORWARD LENGTH=183          164   1e-41
AT5G66040.1  | chr5:26410557-26411139 FORWARD LENGTH=121          147   1e-36
AT5G66170.2  | chr5:26447828-26448586 FORWARD LENGTH=139          110   1e-25
AT2G21045.1  | chr2:9027858-9028805 FORWARD LENGTH=170             91   9e-20
AT2G17850.1  | chr2:7760005-7760787 REVERSE LENGTH=157             85   8e-18
AT4G27700.1  | chr4:13826541-13827673 REVERSE LENGTH=225           62   5e-11
AT4G24750.1  | chr4:12758422-12760749 REVERSE LENGTH=293           48   9e-07

>AT4G35770.1 | chr4:16945073-16945983 FORWARD LENGTH=183
          Length = 182

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 72/111 (64%), Positives = 90/111 (81%)

Query: 3   VPRSVPVRVAHELQQAGHRYLDVRTEGEFAGGHPVGAVNIPYMYKTGSGLTKNTHFLEKV 62
           +P SVPVRVA EL QAG+RYLDVRT  EF+ GHP  A+N+PYMY+ GSG+ KN  FL +V
Sbjct: 69  IPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGMVKNPSFLRQV 128

Query: 63  STTFGKEDEIIVGCQSGKRSLMAASELCSAGFTAVTDIAGGFSAWKENELP 113
           S+ F K DEII+GC+SG+ S MA+++L +AGFTA+TDIAGG+ AW ENELP
Sbjct: 129 SSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENELP 179



>AT5G66040.1 | chr5:26410557-26411139 FORWARD LENGTH=121
          Length = 120

 Score =  147 bits (371), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 84/112 (75%)

Query: 3   VPRSVPVRVAHELQQAGHRYLDVRTEGEFAGGHPVGAVNIPYMYKTGSGLTKNTHFLEKV 62
           VP SV V VAH+L  AGHRYLDVRT  EF+ GH  GA+N+PYM +  SG++KN  FLE+V
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query: 63  STTFGKEDEIIVGCQSGKRSLMAASELCSAGFTAVTDIAGGFSAWKENELPT 114
           S+ FG+ D IIVGCQSG RS+ A ++L  AGFT V DI GG+SAW +N LPT
Sbjct: 67  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT 118



>AT5G66170.2 | chr5:26447828-26448586 FORWARD LENGTH=139
          Length = 138

 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 72/114 (63%), Gaps = 4/114 (3%)

Query: 6   SVPVRVAHELQQAGHRYLDVRTEGEFAGGHPVGA--VNIPYMYKTGSGLTKNTHFLEKVS 63
           SV V  A  L Q+GH+YLDVRT+ EF  GH   A  VNIPYM  T  G  KN  FLE+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 64  TTFGKEDEIIVGCQSGKRSLMAASELCSA--GFTAVTDIAGGFSAWKENELPTN 115
           +     D+I+VGCQSG RSL A +EL +A  G+  V ++ GG+ AW ++  P N
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWVDHSFPIN 129



>AT2G21045.1 | chr2:9027858-9028805 FORWARD LENGTH=170
          Length = 169

 Score = 91.3 bits (225), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 60/102 (58%)

Query: 6   SVPVRVAHELQQAGHRYLDVRTEGEFAGGHPVGAVNIPYMYKTGSGLTKNTHFLEKVSTT 65
           +V V  A      GHRYLDVRT  EFA  H   A+NIPYM+KT  G   N  FL +V++ 
Sbjct: 43  TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query: 66  FGKEDEIIVGCQSGKRSLMAASELCSAGFTAVTDIAGGFSAW 107
             K++ +IV C +G R   A  +L + G+  V ++ GG+SAW
Sbjct: 103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAW 144



>AT2G17850.1 | chr2:7760005-7760787 REVERSE LENGTH=157
          Length = 156

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 4/117 (3%)

Query: 1   MAVPRSVPVRV--AHELQQAGHRYLDVRTEGEFAGGH--PVGAVNIPYMYKTGSGLTKNT 56
           M+ P+ + + V  A +L  +G+ +LDVRT  EF  GH       N+PY   T  G   N 
Sbjct: 27  MSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQGQEINP 86

Query: 57  HFLEKVSTTFGKEDEIIVGCQSGKRSLMAASELCSAGFTAVTDIAGGFSAWKENELP 113
           +FL+ VS+   + D +I+GC+SG RSL A   L S+GF  V ++ GG+ AW     P
Sbjct: 87  NFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVSSGFKTVRNMDGGYIAWVNKRFP 143



>AT4G27700.1 | chr4:13826541-13827673 REVERSE LENGTH=225
          Length = 224

 Score = 62.0 bits (149), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 61/144 (42%), Gaps = 36/144 (25%)

Query: 5   RSVPVRVAHELQQAGH-RYLDVRTEGEFAGGHPVGAVNIPYMYK---------------- 47
           RSV V+ A  LQ+  +   LDVR E E+  GHP GA+N+  MY+                
Sbjct: 75  RSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVE-MYRLIREWTAWDIARRLGF 133

Query: 48  ----TGSGLTKNTHFLEKVSTTFGKEDEIIVGCQSG--------------KRSLMAASEL 89
                 SG  +N  F++ V     KE +IIV C S                RSL+AA  L
Sbjct: 134 AFFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYLL 193

Query: 90  CSAGFTAVTDIAGGFSAWKENELP 113
              G+  V  + GG   W +  LP
Sbjct: 194 VLNGYKNVFHLEGGIYTWGKEGLP 217



>AT4G24750.1 | chr4:12758422-12760749 REVERSE LENGTH=293
          Length = 292

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 52  LTKNTHFLEKVSTTFGKEDEIIVGCQSGKRSLMAASELCSAGFTAVTDIAGGFSAWKENE 111
           L+ N  FL KV   F K+ E+IV CQ G RSL A   L +AG+  +  + GG  + ++ +
Sbjct: 160 LSFNRLFLSKVEEKFPKDSELIVACQKGLRSLAACELLYNAGYENLFWVQGGLESAQDED 219

Query: 112 LPT 114
           L T
Sbjct: 220 LVT 222



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,664,487
Number of extensions: 99830
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 7
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)