BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0416900 Os12g0416900|AK067230
(138 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0195100 En/Spm-like transposon proteins family protein 290 2e-79
Os12g0416900 Conserved hypothetical protein 284 1e-77
Os06g0315100 103 6e-23
Os06g0517450 En/Spm-like transposon proteins family protein 96 8e-21
Os07g0516500 Hypothetical protein 86 9e-18
Os04g0128300 Conserved hypothetical protein 84 4e-17
Os12g0544600 En/Spm-like transposon proteins family protein 68 3e-12
Os06g0501500 67 5e-12
Os11g0453300 63 7e-11
>Os10g0195100 En/Spm-like transposon proteins family protein
Length = 1299
Score = 290 bits (742), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/138 (99%), Positives = 137/138 (99%)
Query: 1 MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICE 60
MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICE
Sbjct: 1 MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICE 60
Query: 61 GFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRDLACGLDDRGEFEDEGN 120
GFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDI DLLRDLACGLDDRGEFEDEGN
Sbjct: 61 GFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDISDLLRDLACGLDDRGEFEDEGN 120
Query: 121 SDVTNEDLNALKMLSDDY 138
SDVTNEDLNALKMLSDDY
Sbjct: 121 SDVTNEDLNALKMLSDDY 138
>Os12g0416900 Conserved hypothetical protein
Length = 138
Score = 284 bits (727), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICE 60
MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICE
Sbjct: 1 MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICE 60
Query: 61 GFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRDLACGLDDRGEFEDEGN 120
GFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRDLACGLDDRGEFEDEGN
Sbjct: 61 GFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRDLACGLDDRGEFEDEGN 120
Query: 121 SDVTNEDLNALKMLSDDY 138
SDVTNEDLNALKMLSDDY
Sbjct: 121 SDVTNEDLNALKMLSDDY 138
>Os06g0315100
Length = 222
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 10 RHSREYSEGLDIFLQHEFS-SAVGNKIQCPCKKCAGSFWRDESEVHEHLICEGFLRGYKP 68
RH+ Y EG+ FL+ F+ S+ GN I CPCK C S+W + + V EHLIC+GF++ Y+
Sbjct: 14 RHTDGYVEGVTRFLEFAFANSSKGNSILCPCKNCGNSYWTERTTVREHLICDGFMQLYRT 73
Query: 69 LMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRDLACGLDDRGEFEDEGNSDVTNEDL 128
+FHG+ S+F++ V +S+E DDI L+DLACGLD+ G+ E E N N D+
Sbjct: 74 WLFHGKESTFMHDDGDHRVELEKSNEEDDISGFLQDLACGLDEMGDLE-ENNEGQRNVDI 132
Query: 129 NALKMLSDD 137
L DD
Sbjct: 133 GDFYKLVDD 141
>Os06g0517450 En/Spm-like transposon proteins family protein
Length = 419
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 10 RHSREYSEGLDIFLQHEFS-SAVGNKIQCPCKKCAGSFWRDESEVHEHLICEGFLRGYKP 68
R + EY G++ F++ F+ SA GNKI CPCKKC W + + V EHLIC+GF GY+
Sbjct: 3 RSTTEYRRGVNNFIEFAFTHSAKGNKILCPCKKCVNCSWLEANIVIEHLICDGFKHGYRL 62
Query: 69 LMFHGEGSSFVNSAEYDEVG-DVESSEHDDIFDLLRDLACGLDDRGE-FEDEGNSDVTNE 126
+FHGE SS + +++V + +++ D+I ++LRD+A GLD GE +G+S N
Sbjct: 63 WIFHGEASSSAHCTTHEQVQVEQRAADRDEIPEMLRDMAYGLDQMGEGGAADGSSGDANN 122
Query: 127 DLNALKMLSDD 137
D + L DD
Sbjct: 123 DADDFYRLVDD 133
>Os07g0516500 Hypothetical protein
Length = 294
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 1 MDKQWMDKPRHSREYSEGLDIFLQHEFS-SAVGNKIQCPCKKCAGSFWRDESEVHEHLIC 59
MDK WM R S EY+ G+D F++ S SA N+I CPCK C +W E +V EHLIC
Sbjct: 1 MDKDWMKTSRSSAEYNIGVDKFIEFALSNSAHNNRIICPCKNCGNRYWLGEHKVREHLIC 60
Query: 60 EGFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEH----DDIFDLLRDLACGLDDRGEF 115
+GFL GY + HGE S + V SS H DD+ +L + D R
Sbjct: 61 DGFLAGYTSWIHHGESMSTSKPS-------VASSSHHEQNDDMDQMLLEGLGMYDSRTLG 113
Query: 116 EDEGNSDVTNEDLNALKMLSDD 137
D+G D + D A L +D
Sbjct: 114 TDDGAEDDLDVDAEAYYKLVND 135
>Os04g0128300 Conserved hypothetical protein
Length = 121
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 MDKQWMDKPRHSREYSEGLDIFLQHEFS-SAVGNKIQCPCKKCAGSFWRDESEVHEHLIC 59
MDK WM R S EY+ G++ F+ S SA N+I CPCK C +W E EV EHLIC
Sbjct: 1 MDKGWMKASRSSIEYNIGVNKFIDFALSTSASDNRILCPCKTCGNRYWLGEHEVREHLIC 60
Query: 60 EGFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRD 104
+GFL GY + HGE S +NS D +DD+ +L D
Sbjct: 61 DGFLAGYTSWIHHGE--SMLNSKPSDASSSHCEEHNDDMDQMLLD 103
>Os12g0544600 En/Spm-like transposon proteins family protein
Length = 757
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 3 KQWMDKPRHSREYSEGLDIFLQHEFS-SAVGNKIQCPCKKCAGSFWRDESEVHEHLICEG 61
K+ + PR S EY G+D FL + ++ +KI+CPCK+C + EV++HL+C G
Sbjct: 7 KKLLLFPRPSDEYLAGIDGFLLFAYREKSLEDKIRCPCKECVNKWLLTRDEVYDHLVCHG 66
Query: 62 FLRGYKPLMFHGEGSSFVNS 81
L GY P HGE +SF+++
Sbjct: 67 MLLGYSPWGCHGETTSFISA 86
>Os06g0501500
Length = 536
Score = 66.6 bits (161), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 1 MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNK---IQCPCKKCAGS-FWRDESEVHEH 56
+D+ WMDK R+ Y EG+DIF++ + K I+CPC C W D SE+ +H
Sbjct: 2 VDRAWMDKERYRASYIEGVDIFMKAAKKNVASKKTKDIRCPCVHCKNQKSWNDPSEIEQH 61
Query: 57 LICEGFLRGYKPLMFHGE 74
L+ GF+ GY HGE
Sbjct: 62 LVTLGFVEGYTNWSHHGE 79
>Os11g0453300
Length = 232
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 2 DKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNK---IQCPCKKCAGS-FWRDESEVHEHL 57
D+ W++K R+ Y EG+DIF++ + K I+CPC C W D S + +HL
Sbjct: 3 DRAWVNKERYRASYIEGVDIFMKAAKKNVASKKTKDIRCPCVHCKNQKSWNDPSVIEQHL 62
Query: 58 ICEGFLRGYKPLMFHGEGSS 77
+ GF+ GY +HGE S
Sbjct: 63 VTHGFVEGYTNWSYHGEIPS 82
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,284,480
Number of extensions: 220512
Number of successful extensions: 897
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 15
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)