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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0416900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.75 (0.0345) R2 : 0.519
β1 : -0.869 (0.127) R2dD : 0.0534 R2D : 0.0747
β2 : 1.15 (0.106) R2dC : 0.191 R2C : -0.206
β3 : 3.08 (0.158) R2dE : 0.627 R2E : 0.271
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.148 (0.0745) R2dN8 : 0.00598 R2N8 : 0.0107
σ : 0.643
deviance : 190.72
__
_____
C
peak time of C : 20.6
E
wheather : temperature
threshold : 37.08
memory length : 300
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.03
open length of G : 7.21

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.23 0.639 4.75 -0.833 1.08 2.94 1.32 -0.172 -0.157 20 35.37 295 6.03 7.03
185.07 0.634 4.76 -0.832 1.12 2.97 1.38 -- -0.163 20.1 35.92 296 6.03 7.12
189.17 0.641 4.76 -0.772 1.1 2.98 -- -0.64 -0.155 20.3 36.47 317 5.9 7.2
190.72 0.643 4.75 -0.869 1.15 3.08 -- -- -0.148 20.6 37.08 300 6.03 7.21
226.89 0.702 4.73 -0.932 -- 2.31 -- -0.0834 -0.225 -- 34.5 498 6.48 5.92
258.66 0.754 4.77 -1.17 1.26 -- -0.421 -- -0.372 14.8 -- -- -- --
259.23 0.754 4.78 -1.18 1.26 -- -- -- -0.375 14.9 -- -- -- --
226.38 0.701 4.73 -0.935 -- 2.31 -- -- -0.196 -- 35.16 507 6.56 5.47
210.01 0.675 4.74 -- 1.24 3.37 -- -- -0.0364 20.8 35.99 293 6.01 7.42
350.71 0.875 4.78 -1.23 -- -- -- -- -0.407 -- -- -- -- --
295.74 0.804 4.75 -- 1.28 -- -- -- -0.243 14.9 -- -- -- --
220.03 0.691 4.72 -- -- 2.76 -- -- 0.0457 -- 36.28 2324 6.91 3.81
390.66 0.923 4.75 -- -- -- -- -- -0.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.21 temperature 30.0 270 < th dose dependent rect. 6 7
5 197.62 temperature 30.0 270 < th dose dependent rect. 7 4
7 198.76 temperature 30.0 270 < th dose dependent rect. 6 19
9 198.83 atmosphere 995.0 270 > th dose dependent rect. 20 16
11 199.45 atmosphere 995.0 270 > th dose dependent rect. 6 7
14 199.88 atmosphere 1010.0 270 < th dose independent rect. 23 9
17 200.20 temperature 30.0 270 < th dose dependent rect. 8 2
23 201.14 atmosphere 1015.0 270 < th dose dependent rect. 24 8
41 202.87 temperature 30.0 270 < th dose dependent rect. 19 18
63 204.31 atmosphere 1010.0 270 < th dose independent rect. 1 17
122 207.18 radiation 1.0 4320 > th dose independent rect. 18 17
152 207.75 atmosphere 1015.0 270 < th dose dependent rect. 1 17
156 207.80 radiation 1.0 4320 > th dose independent rect. 18 13
175 208.35 temperature 10.0 270 > th dose dependent rect. 11 21
189 208.58 temperature 30.0 720 < th dose dependent sin 7 NA
191 208.60 radiation 30.0 270 < th dose independent rect. 23 9
193 208.64 humidity 70.0 270 > th dose independent rect. 23 9
197 208.71 atmosphere 995.0 10 > th dose dependent rect. 8 7
198 208.71 temperature 10.0 270 > th dose dependent rect. 1 18
200 208.74 atmosphere 1010.0 270 < th dose independent rect. 11 9
229 209.14 temperature 10.0 270 > th dose independent rect. 6 7
230 209.14 atmosphere 995.0 270 > th dose independent rect. 6 7
231 209.14 atmosphere 1015.0 270 < th dose independent rect. 6 7
232 209.14 temperature 10.0 270 > th dose independent rect. 13 17
240 209.27 temperature 25.0 270 < th dose independent rect. 6 19
241 209.28 temperature 25.0 1440 < th dose dependent rect. 7 2
242 209.30 precipitation 0.1 4320 < th dose independent rect. 6 1
243 209.30 precipitation 0.1 4320 < th dose dependent rect. 6 1
244 209.32 temperature 25.0 270 < th dose independent rect. 7 5
258 209.48 precipitation 0.1 270 < th dose independent rect. 23 9
261 209.48 precipitation 0.1 270 < th dose dependent rect. 23 9
269 209.55 radiation 1.0 4320 < th dose independent rect. 18 17
270 209.56 precipitation 0.1 270 < th dose independent rect. 6 7
271 209.56 precipitation 0.1 270 < th dose dependent rect. 6 7
277 209.61 wind 9.0 270 < th dose independent rect. 8 15
282 209.68 atmosphere 1015.0 270 < th dose independent rect. 13 17
287 209.73 wind 9.0 270 < th dose independent rect. 6 7
295 209.83 humidity 80.0 14400 > th dose dependent rect. 20 8
305 209.98 precipitation 0.1 270 < th dose independent rect. 13 17
306 209.98 precipitation 0.1 270 < th dose dependent rect. 13 17
308 209.99 temperature 10.0 270 > th dose independent rect. 23 9
309 209.99 temperature 30.0 270 < th dose independent rect. 23 9
310 209.99 humidity 50.0 270 > th dose independent rect. 23 9
312 209.99 atmosphere 995.0 270 > th dose independent rect. 23 9
313 209.99 temperature 10.0 270 > th dose independent rect. 8 15
314 210.00 wind 9.0 270 < th dose independent rect. 23 9
316 210.01 radiation 40.0 270 < th dose dependent rect. 24 8
318 210.04 atmosphere 1000.0 270 > th dose independent rect. 20 16
319 210.04 temperature 10.0 270 > th dose dependent rect. 23 21
340 210.16 temperature 10.0 270 > th dose dependent rect. 12 18
341 210.17 radiation 1.0 4320 < th dose independent rect. 18 13
359 210.29 humidity 90.0 14400 > th dose dependent rect. 6 1
374 210.44 temperature 10.0 1440 > th dose dependent rect. 7 2
377 210.47 atmosphere 1010.0 270 < th dose independent rect. 12 20
380 210.49 radiation 1.0 4320 > th dose independent rect. 4 7
407 210.62 humidity 80.0 14400 > th dose dependent rect. 20 12
416 210.67 radiation 1.0 4320 < th dose independent rect. 21 14
423 210.70 humidity 80.0 14400 > th dose dependent rect. 22 3
425 210.71 precipitation 0.1 270 < th dose independent rect. 8 15
427 210.71 precipitation 0.1 270 < th dose dependent rect. 8 15
432 210.73 radiation 1.0 4320 < th dose independent rect. 24 11
450 210.82 radiation 1.0 4320 > th dose independent sin 9 NA
451 210.83 wind 9.0 270 < th dose independent rect. 13 17
481 210.89 temperature 10.0 270 > th dose dependent rect. 23 9
484 210.91 radiation 1.0 4320 < th dose independent rect. 4 7
517 211.03 temperature 30.0 1440 < th dose dependent rect. 5 5
529 211.07 atmosphere 995.0 270 > th dose independent rect. 13 17
571 211.23 atmosphere 1010.0 90 < th dose independent rect. 15 17
572 211.23 humidity 80.0 14400 > th dose dependent sin 9 NA
611 211.35 atmosphere 1010.0 30 < th dose independent rect. 2 18
640 211.51 radiation 1.0 4320 < th dose independent sin 8 NA
663 211.58 atmosphere 995.0 10 > th dose dependent rect. 23 15
670 211.60 radiation 40.0 4320 < th dose dependent rect. 18 11
728 211.83 radiation 20.0 4320 > th dose independent rect. 7 1
762 211.91 precipitation 0.1 43200 < th dose independent rect. 6 1
771 211.91 precipitation 0.1 43200 < th dose dependent rect. 6 1
778 211.93 humidity 50.0 270 > th dose independent rect. 6 7
786 211.94 atmosphere 1015.0 10 < th dose dependent rect. 2 18
803 212.03 wind 1.0 270 > th dose independent rect. 6 7
811 212.07 temperature 30.0 270 < th dose independent rect. 19 17
815 212.08 wind 1.0 270 > th dose independent rect. 12 8
821 212.10 humidity 90.0 14400 < th dose independent rect. 6 1
823 212.10 atmosphere 995.0 30 > th dose dependent rect. 8 18
826 212.11 wind 9.0 270 < th dose dependent rect. 8 16
859 212.16 wind 9.0 90 < th dose dependent rect. 1 8
880 212.22 temperature 10.0 270 > th dose dependent rect. 11 9
899 212.30 atmosphere 1015.0 10 < th dose dependent rect. 2 7
918 212.37 humidity 90.0 14400 > th dose independent rect. 6 1
940 212.41 humidity 90.0 14400 < th dose independent rect. 22 18
949 212.43 temperature 30.0 4320 < th dose dependent rect. 10 2
968 212.53 temperature 10.0 270 > th dose independent rect. 12 8
970 212.53 temperature 10.0 270 > th dose independent rect. 20 16
983 212.57 temperature 15.0 270 > th dose independent rect. 1 16