Os04g0128300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0128300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.17 | 0.29 | 10.1 | -0.414 | 0.601 | 0.625 | 0.19 | -0.636 | -0.0424 | 23 | 12.44 | 9 | -- | -- |
| 38.29 | 0.29 | 10.1 | -0.415 | 0.668 | 0.564 | -0.509 | -- | -0.0453 | 23.1 | 12.44 | 9 | -- | -- |
| 37.87 | 0.287 | 10.1 | -0.423 | 0.624 | 0.605 | -- | -0.5 | -0.0437 | 23 | 11.93 | 6 | -- | -- |
| 39.09 | 0.291 | 10.1 | -0.414 | 0.594 | 0.62 | -- | -- | -0.0328 | 23 | 10.8 | 4 | -- | -- |
| 42.01 | 0.302 | 10.1 | -0.423 | -- | 1.05 | -- | -0.512 | -0.0354 | -- | 10.66 | 6 | -- | -- |
| 44.45 | 0.313 | 10.1 | -0.422 | 1.28 | -- | -0.438 | -- | -0.0539 | 23.4 | -- | -- | -- | -- |
| 45.28 | 0.315 | 10.1 | -0.404 | 1.28 | -- | -- | -- | -0.0523 | 23.4 | -- | -- | -- | -- |
| 43.22 | 0.306 | 10.1 | -0.415 | -- | 1.04 | -- | -- | -0.0292 | -- | 9.38 | 4 | -- | -- |
| 43.41 | 0.307 | 10.1 | -- | 0.593 | 0.622 | -- | -- | 0.00153 | 23 | 11.58 | 4 | -- | -- |
| 148.09 | 0.569 | 10.1 | -0.371 | -- | -- | -- | -- | -0.0391 | -- | -- | -- | -- | -- |
| 49.59 | 0.329 | 10.1 | -- | 1.28 | -- | -- | -- | -0.00723 | 23.4 | -- | -- | -- | -- |
| 47.74 | 0.322 | 10.1 | -- | -- | 1.03 | -- | -- | 0.0196 | -- | 9.086 | 4 | -- | -- |
| 151.72 | 0.575 | 10.1 | -- | -- | -- | -- | -- | 0.00201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.81 | radiation | 10 | 10 | < th | dose dependent | sin | 3 | NA |
| 4 | 36.49 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 5 | 36.73 | radiation | 10 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 11 | 36.94 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 12 | 37.02 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 18 | 37.16 | radiation | 1 | 10 | > th | dose dependent | sin | 7 | NA |
| 29 | 37.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 11 |
| 38 | 37.53 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 48 | 37.61 | radiation | 1 | 30 | > th | dose independent | sin | 2 | NA |
| 65 | 37.74 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 74 | 37.79 | radiation | 1 | 30 | < th | dose independent | sin | 2 | NA |
| 82 | 37.84 | humidity | 60 | 90 | > th | dose independent | rect. | 1 | 16 |
| 86 | 37.86 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 18 |
| 90 | 37.88 | humidity | 90 | 10 | < th | dose dependent | sin | 5 | NA |
| 100 | 37.93 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 120 | 38.00 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 17 |
| 134 | 38.06 | humidity | 90 | 30 | < th | dose dependent | rect. | 20 | 16 |
| 148 | 38.13 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 149 | 38.13 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 169 | 38.18 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 189 | 38.25 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 218 | 38.31 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 243 | 38.36 | humidity | 90 | 30 | < th | dose dependent | rect. | 22 | 14 |
| 248 | 38.37 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 255 | 38.38 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 286 | 38.46 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 291 | 38.46 | radiation | 20 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 316 | 38.50 | radiation | 1 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 317 | 38.50 | humidity | 50 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 333 | 38.53 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 340 | 38.54 | humidity | 70 | 10 | > th | dose independent | rect. | 1 | 16 |
| 341 | 38.54 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 12 |
| 355 | 38.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 359 | 38.57 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 360 | 38.58 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 20 |
| 364 | 38.58 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 369 | 38.59 | humidity | 50 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 370 | 38.59 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 377 | 38.61 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 11 |
| 401 | 38.62 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 412 | 38.64 | radiation | 1 | 30 | < th | dose independent | rect. | 3 | 15 |
| 472 | 38.69 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 518 | 38.76 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 18 |
| 528 | 38.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 577 | 38.84 | radiation | 20 | 30 | < th | dose independent | rect. | 1 | 16 |
| 597 | 38.86 | humidity | 50 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 635 | 38.91 | humidity | 90 | 90 | < th | dose independent | rect. | 19 | 17 |
| 638 | 38.91 | humidity | 90 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 670 | 38.93 | humidity | 50 | 10 | > th | dose dependent | sin | 3 | NA |
| 677 | 38.94 | temperature | 15 | 270 | > th | dose independent | rect. | 4 | 8 |
| 694 | 38.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 725 | 38.99 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 7 |
| 743 | 39.00 | radiation | 30 | 90 | < th | dose independent | rect. | 12 | 17 |
| 756 | 39.00 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 757 | 39.01 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 17 | 6 |
| 763 | 39.01 | temperature | 25 | 90 | > th | dose independent | rect. | 19 | 12 |
| 815 | 39.04 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 8 |
| 829 | 39.06 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 5 |
| 843 | 39.07 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 882 | 39.11 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 7 |
| 913 | 39.13 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 20 | 16 |
| 929 | 39.14 | wind | 1 | 90 | > th | dose independent | rect. | 1 | 5 |
| 934 | 39.14 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 986 | 39.19 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 7 |