Os12g0544600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : En/Spm-like transposon proteins family protein.
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Os12g0544600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : En/Spm-like transposon proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 354.64 | 0.885 | 4.72 | -1.14 | 2.28 | 1.85 | -3.01 | -1.7 | 0.456 | 21 | 77.04 | 792 | -- | -- |
| 358.36 | 0.882 | 4.73 | -1.2 | 2.26 | 1.85 | -2.27 | -- | 0.461 | 21 | 77 | 806 | -- | -- |
| 374.43 | 0.901 | 4.74 | -1.2 | 2.28 | 1.82 | -- | 0.597 | 0.455 | 20.8 | 76.31 | 805 | -- | -- |
| 375.09 | 0.902 | 4.73 | -1.15 | 2.29 | 1.86 | -- | -- | 0.458 | 20.8 | 76.67 | 800 | -- | -- |
| 480.33 | 1.02 | 4.67 | -1.07 | -- | 1.78 | -- | 0.528 | 0.493 | -- | 75.25 | 1428 | -- | -- |
| 417.66 | 0.958 | 4.72 | -1.41 | 1.27 | -- | -2.37 | -- | 0.399 | 21.4 | -- | -- | -- | -- |
| 436.77 | 0.979 | 4.72 | -1.32 | 1.3 | -- | -- | -- | 0.406 | 20.9 | -- | -- | -- | -- |
| 476.24 | 1.02 | 4.65 | -1.13 | -- | 1.72 | -- | -- | 0.549 | -- | 75.15 | 1432 | -- | -- |
| 409.53 | 0.943 | 4.7 | -- | 2.37 | 2.02 | -- | -- | 0.589 | 20.8 | 76.3 | 800 | -- | -- |
| 533.96 | 1.08 | 4.68 | -1.32 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 482.81 | 1.03 | 4.68 | -- | 1.31 | -- | -- | -- | 0.553 | 20.9 | -- | -- | -- | -- |
| 509.12 | 1.05 | 4.61 | -- | -- | 1.89 | -- | -- | 0.687 | -- | 75.86 | 1428 | -- | -- |
| 579.98 | 1.12 | 4.65 | -- | -- | -- | -- | -- | 0.544 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 353.80 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 6 | 356.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 8 | 356.84 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 21 |
| 12 | 357.42 | humidity | 90 | 720 | < th | dose dependent | sin | 11 | NA |
| 24 | 358.07 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 23 |
| 26 | 358.14 | humidity | 80 | 720 | > th | dose independent | rect. | 2 | 23 |
| 27 | 358.15 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 21 |
| 29 | 358.19 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 33 | 358.46 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 23 |
| 41 | 358.81 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 23 |
| 43 | 358.87 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 16 |
| 46 | 358.96 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 58 | 359.19 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 23 |
| 59 | 359.20 | humidity | 80 | 720 | > th | dose independent | rect. | 2 | 20 |
| 71 | 359.60 | humidity | 80 | 1440 | < th | dose dependent | sin | 9 | NA |
| 92 | 360.16 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 23 |
| 117 | 360.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 119 | 360.85 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 124 | 360.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 131 | 361.11 | humidity | 80 | 720 | < th | dose independent | rect. | 5 | 23 |
| 139 | 361.23 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 18 |
| 142 | 361.29 | humidity | 80 | 720 | < th | dose independent | sin | 14 | NA |
| 169 | 361.74 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 174 | 361.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 198 | 362.18 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 12 |
| 241 | 362.66 | humidity | 90 | 1440 | < th | dose dependent | sin | 5 | NA |
| 364 | 363.94 | humidity | 80 | 1440 | > th | dose independent | sin | 5 | NA |
| 413 | 364.42 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 462 | 364.91 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 526 | 365.44 | humidity | 70 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 565 | 365.76 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 615 | 366.10 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 623 | 366.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 632 | 366.22 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 691 | 366.64 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 702 | 366.71 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 754 | 367.06 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 766 | 367.13 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 779 | 367.18 | humidity | 80 | 720 | > th | dose independent | sin | 0 | NA |
| 797 | 367.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 821 | 367.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 833 | 367.39 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 837 | 367.40 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 881 | 367.57 | humidity | 80 | 720 | > th | dose independent | sin | 10 | NA |
| 904 | 367.63 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 998 | 368.01 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 8 |