BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0269200 Os12g0269200|AB016505
(156 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0269200 Similar to Prolamin precursor 177 3e-45
M23745 154 2e-38
Os07g0206500 13 kDa prolamin precursor 121 2e-28
Os12g0269600 Similar to 13 kDa prolamin precursor 98 2e-21
Os05g0330600 Similar to Prolamin 96 7e-21
Os07g0219400 Prolamin precursor 94 5e-20
Y00747 81 3e-16
Os05g0329400 Similar to Prolamin 76 8e-15
Os05g0329100 Prolamin 75 2e-14
Os05g0332000 Similar to Prolamin precursor 70 7e-13
Os06g0507200 Glutelin family protein 64 6e-11
>Os12g0269200 Similar to Prolamin precursor
Length = 156
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/137 (67%), Positives = 92/137 (67%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
QFDAVTQVYR SPCGEFVRQQCSTVATPFFQSPVFQLRN
Sbjct: 20 QFDAVTQVYRQYQLQPHLMLQQQMLSPCGEFVRQQCSTVATPFFQSPVFQLRNCQVMQQQ 79
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYP 139
SHCQAISSVQAIVQQLRLQQFASVYFD NMPSICGIYP
Sbjct: 80 CCQQLRMIAQQSHCQAISSVQAIVQQLRLQQFASVYFDQSQAQAQAMLALNMPSICGIYP 139
Query: 140 SYNTAPCSIPTVGGIWY 156
SYNTAPCSIPTVGGIWY
Sbjct: 140 SYNTAPCSIPTVGGIWY 156
>M23745
Length = 149
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 88/137 (64%), Gaps = 7/137 (5%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
QFDAVTQVYR SPCGEFVRQQCSTVATPFFQSPVFQLRN
Sbjct: 20 QFDAVTQVYRQYQLQQQML------SPCGEFVRQQCSTVATPFFQSPVFQLRNCQVMQQQ 73
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYP 139
SHCQAISSVQAIVQQL+LQQF+ VYFD N+PSICGIYP
Sbjct: 74 CCQQLRMIAQQSHCQAISSVQAIVQQLQLQQFSGVYFDQAQAQAQAMLGLNLPSICGIYP 133
Query: 140 SYNTAPCSIPTVGGIWY 156
SYNT P IPTVGGIWY
Sbjct: 134 SYNTVP-EIPTVGGIWY 149
>Os07g0206500 13 kDa prolamin precursor
Length = 156
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 77/137 (56%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
+FD ++Q YR SPC EFVRQQ S VATPF+Q FQL N
Sbjct: 20 RFDPLSQSYRQYQLQSHLLLQQQVLSPCSEFVRQQYSIVATPFWQPATFQLINNQVMQQQ 79
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYP 139
SH QAIS VQAIVQQL+LQQF+ VYFD N+PSICGIYP
Sbjct: 80 CCQQLRLVAQQSHYQAISIVQAIVQQLQLQQFSGVYFDQTQAQAQTLLTFNLPSICGIYP 139
Query: 140 SYNTAPCSIPTVGGIWY 156
+Y +AP SI TVGG+WY
Sbjct: 140 NYYSAPRSIATVGGVWY 156
>Os12g0269600 Similar to 13 kDa prolamin precursor
Length = 78
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 50/66 (75%)
Query: 91 SHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYPSYNTAPCSIPT 150
SHCQAISSV AIVQQL+LQQFA VYFD +PSIC IYPSYNTAPCSIPT
Sbjct: 13 SHCQAISSVLAIVQQLQLQQFAGVYFDQTQAQAQAMLALKLPSICVIYPSYNTAPCSIPT 72
Query: 151 VGGIWY 156
+GGIWY
Sbjct: 73 IGGIWY 78
>Os05g0330600 Similar to Prolamin
Length = 150
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
QFD + Q YR SP EFVRQQ A+PF QS FQLRN
Sbjct: 20 QFDVLGQSYRQYQLQSPVLLQQQVLSPYNEFVRQQYGIAASPFLQSAAFQLRNNQVWQQL 79
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYP 139
SH Q I+ VQAIVQQL+LQQF +YFD N+PS GIYP
Sbjct: 80 GLVAQQ-----SHYQDINIVQAIVQQLQLQQFGDLYFDRNLAQAQALLAFNVPSRYGIYP 134
Query: 140 SYNTAPCSIPTVGGI 154
Y AP +I T+GG+
Sbjct: 135 RYYGAPSTITTLGGV 149
>Os07g0219400 Prolamin precursor
Length = 151
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
QFD + Q R S EFVRQQ S A+PF QS VFQLRN
Sbjct: 20 QFDVLGQNIRQYQVQSPLLLQQQVLSLYNEFVRQQYSIAASPFLQSAVFQLRNNQVLQQL 79
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYP 139
SH Q I+ VQAI QQL LQQF +Y D N+PS GIYP
Sbjct: 80 RLVAQQ-----SHYQDINVVQAIAQQLHLQQFGDLYIDRNLAQAQALLAFNLPSTYGIYP 134
Query: 140 SYNTAPCSIPTVGGIWY 156
Y +AP SI T+GG+ Y
Sbjct: 135 RYYSAPGSITTLGGVLY 151
>Y00747
Length = 149
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 45 SPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXXXXXXXXXXXXXSHCQAISSVQAIVQ 104
SP EFVRQQ A+PF QS FQLRN S Q I+ VQAI
Sbjct: 45 SPYNEFVRQQYGIAASPFLQSAAFQLRNNQVWQHQAGGQQ------SRYQDINIVQAIAY 98
Query: 105 QLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYPSYNTAPCSIPTVGGI 154
+L+LQQF +YFD N+PS GIYP Y AP +I T+GG+
Sbjct: 99 ELQLQQFGDLYFDRNQAQAQALLAFNVPSRYGIYPRYYGAPSTITTLGGV 148
>Os05g0329400 Similar to Prolamin
Length = 150
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
QFD + Q YR SP EFVRQQ A+PF QS VFQLRN
Sbjct: 20 QFDVLGQSYRQYQLQSPVLLQQQVLSPYNEFVRQQYGIAASPFLQSAVFQLRN-----NQ 74
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYP 139
SH Q I+ VQAI QQL+LQQF +YFD N+PS GIYP
Sbjct: 75 VWQQLALVAQQSHYQDINIVQAIAQQLQLQQFGDLYFDRNLAQAQALLAFNVPSRYGIYP 134
Query: 140 SYNTAPCSIPTVGGI 154
Y AP +I T+GG+
Sbjct: 135 RYYGAPSTITTLGGV 149
>Os05g0329100 Prolamin
Length = 150
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
QFD + Q YR SP EFVRQQ A+PF QS FQLRN
Sbjct: 20 QFDVLGQSYRQYQLQSPVLLQQQVLSPYNEFVRQQYGIAASPFLQSAAFQLRN-----NQ 74
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYP 139
SH Q I+ VQAI QQL+LQQF +YFD N+PS GIYP
Sbjct: 75 VWQQLALVAQQSHYQDINIVQAIAQQLQLQQFGDLYFDRNLAQAQALLAFNVPSRYGIYP 134
Query: 140 SYNTAPCSIPTVGGI 154
Y AP +I T+GG+
Sbjct: 135 RYYGAPSTITTLGGV 149
>Os05g0332000 Similar to Prolamin precursor
Length = 153
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 20 QFDAVTQVYRXXXXXXXXXXXXXXXSPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXX 79
QFD + Q YR SP EFVRQQ A+P QS FQL+N
Sbjct: 20 QFDVLGQSYRQYQLQSPLLLQQHVLSPYNEFVRQQYGIAASPLLQSAAFQLKN-----NQ 74
Query: 80 XXXXXXXXXXXSHCQAISSVQAIVQQLRLQQFASVYFDXXX--XXXXXXXXXNMPSICGI 137
SH Q I+ VQAI QQL+LQQF +YFD N+PS GI
Sbjct: 75 VWQQLRLVAQQSHYQDINIVQAIAQQLQLQQFDDLYFDRNLGQAQAQALLALNLPSRYGI 134
Query: 138 YPSYNTAPCSIPTVGGIWY 156
YP Y +AP SI T+GG+ Y
Sbjct: 135 YPRYYSAPSSITTLGGVLY 153
>Os06g0507200 Glutelin family protein
Length = 149
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 45 SPCGEFVRQQCSTVATPFFQSPVFQLRNXXXXXXXXXXXXXXXXXXSHCQAISS-VQAIV 103
+PC EFVRQQCS ++ P+ QS QL + HCQAI + VQ+I+
Sbjct: 40 NPCNEFVRQQCSPMSLPWEQSRRLQLSSCQVMRQQCCQQMRLMAQQYHCQAICTMVQSIM 99
Query: 104 QQLRLQQFASVYFDXXXXXXXXXXXXNMPSICGIYPSYNTAPCSIPT 150
QQ+ QF + + N+PS+CG+YP Y + PC + T
Sbjct: 100 QQV---QFDAGFVGEPQAQAQAQVALNLPSMCGVYPRYCSTPCKVAT 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,688,477
Number of extensions: 54313
Number of successful extensions: 160
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 13
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)