Os05g0329400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prolamin.
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Os05g0329400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Prolamin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 335.34 | 0.86 | 7.14 | -3.12 | 0.0945 | -1.57 | 1.64 | -0.741 | 0.728 | 4.99 | 25 | 4099 | -- | -- |
| 335.52 | 0.853 | 7.12 | -2.95 | 0.0923 | -1.64 | 1.69 | -- | 0.769 | 4.94 | 25 | 4098 | -- | -- |
| 342.08 | 0.861 | 7.15 | -3.18 | 0.0839 | -1.52 | -- | -0.901 | 0.726 | 5.7 | 24.8 | 4111 | -- | -- |
| 341.4 | 0.861 | 7.12 | -2.95 | 0.165 | -1.59 | -- | -- | 0.762 | 8.62 | 25 | 4212 | -- | -- |
| 342.76 | 0.862 | 7.14 | -3.06 | -- | -1.57 | -- | -0.498 | 0.746 | -- | 24.81 | 4103 | -- | -- |
| 414.84 | 0.955 | 7.14 | -3.48 | 0.00838 | -- | 1.44 | -- | 0.694 | 5.17 | -- | -- | -- | -- |
| 416.24 | 0.955 | 7.13 | -3.47 | 0.25 | -- | -- | -- | 0.689 | 10.7 | -- | -- | -- | -- |
| 342.83 | 0.862 | 7.12 | -2.95 | -- | -1.61 | -- | -- | 0.769 | -- | 24.87 | 4098 | -- | -- |
| 343.44 | 0.863 | 6.82 | -- | 0.194 | -3.04 | -- | -- | 2.07 | 9.84 | 16.39 | 47520 | -- | -- |
| 420.09 | 0.958 | 7.14 | -3.48 | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
| 733.71 | 1.27 | 7.05 | -- | 0.283 | -- | -- | -- | 1.08 | 11.6 | -- | -- | -- | -- |
| 345.7 | 0.866 | 6.83 | -- | -- | -3.05 | -- | -- | 2.07 | -- | 16.42 | 47520 | -- | -- |
| 738.74 | 1.27 | 7.05 | -- | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 325.92 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 2 | 326.17 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 12 | 327.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 21 | 328.20 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 67 | 329.36 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 85 | 329.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 86 | 329.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 94 | 329.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 96 | 329.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 104 | 329.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 114 | 330.02 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 118 | 330.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 119 | 330.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 121 | 330.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 122 | 330.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 126 | 330.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 134 | 330.15 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 135 | 330.16 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 147 | 330.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 148 | 330.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 156 | 330.41 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 167 | 330.51 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 173 | 330.60 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 174 | 330.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 176 | 330.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 180 | 330.63 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 182 | 330.68 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 185 | 330.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 186 | 330.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 15 |
| 188 | 330.77 | temperature | 25.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 193 | 330.80 | temperature | 25.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 220 | 330.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 225 | 330.99 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 244 | 331.00 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 245 | 331.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 250 | 331.04 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 272 | 331.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 286 | 331.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 287 | 331.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 316 | 331.49 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 333 | 331.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 348 | 331.66 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 364 | 331.72 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 366 | 331.74 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 452 | 331.96 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 453 | 331.96 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 465 | 331.99 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 3 | NA |
| 481 | 332.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 503 | 332.03 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 520 | 332.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 16 |
| 545 | 332.10 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 563 | 332.13 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 3 | NA |
| 569 | 332.13 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 3 | NA |
| 607 | 332.25 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 716 | 332.40 | temperature | 30.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 721 | 332.41 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 722 | 332.41 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 12 |
| 773 | 332.47 | temperature | 30.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 844 | 332.52 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 2 | 15 |