BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0204500 Os12g0204500|AK069867
(295 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0204500 Protein of unknown function DUF579, plant fami... 462 e-130
Os11g0242600 Protein of unknown function DUF579, plant fami... 212 2e-55
Os06g0687600 Protein of unknown function DUF579, plant fami... 168 3e-42
Os04g0649900 Protein of unknown function DUF579, plant fami... 161 5e-40
Os11g0490100 Protein of unknown function DUF579, plant fami... 151 6e-37
Os02g0158500 Protein of unknown function DUF579, plant fami... 110 1e-24
>Os12g0204500 Protein of unknown function DUF579, plant family protein
Length = 295
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/295 (78%), Positives = 233/295 (78%)
Query: 1 MSSPMHVRKAIHFVSMKAKLQSXXXXXXXXXXXXXXXXXXXXXXXXSFXXXXXXXXXXXX 60
MSSPMHVRKAIHFVSMKAKLQS SF
Sbjct: 1 MSSPMHVRKAIHFVSMKAKLQSFGGLRLLLVGCLAALLLLFAVRTLSFTTSSATATAARE 60
Query: 61 XXXXGCGKLPAAVAQAMVHYATANVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAM 120
GCGKLPAAVAQAMVHYATANVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAM
Sbjct: 61 AAEAGCGKLPAAVAQAMVHYATANVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAM 120
Query: 121 WAALNHGGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELIALRHEPACTSQP 180
WAALNHGGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELIALRHEPACTSQP
Sbjct: 121 WAALNHGGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELIALRHEPACTSQP 180
Query: 181 DLXXXXXXSCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYXXXXXXXXXXX 240
DL SCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIY
Sbjct: 181 DLAAAAAASCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYTAGMAARARTP 240
Query: 241 XXXXXEVFVHDVDRHVEDTFSKAFLCDGYLVEQVGRIRRFVIPSHRDKDGTPFCP 295
EVFVHDVDRHVEDTFSKAFLCDGYLVEQVGRIRRFVIPSHRDKDGTPFCP
Sbjct: 241 GAGATEVFVHDVDRHVEDTFSKAFLCDGYLVEQVGRIRRFVIPSHRDKDGTPFCP 295
>Os11g0242600 Protein of unknown function DUF579, plant family protein
Length = 316
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 144/237 (60%), Gaps = 12/237 (5%)
Query: 69 LPAAVAQAMVHYATANVTP-----QQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWAA 123
+PA VA+A+VHYAT+N T +++A E+ + R + RAPCN LVFGLG +A+WAA
Sbjct: 82 VPAGVAEALVHYATSNATAWGRGRRRSAEEVAATARAVSRRAPCNLLVFGLGHGAALWAA 141
Query: 124 LNHGGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELIALRHEPACT----SQ 179
LNHGGRTVFLEED + ++ +E+Y VAY DADEL+ALR CT +Q
Sbjct: 142 LNHGGRTVFLEEDDALVSGASPASLAIEAYRVAYLASAADADELLALRDSEHCTGAAATQ 201
Query: 180 PDLXXXXXXSCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYX-XXXXXXXX 238
C+LA+RGLP F+E EWD+I+VDA P + MGAIY
Sbjct: 202 LSPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAPPPPTTTAMMGAIYTAAVAARARR 261
Query: 239 XXXXXXXEVFVHDVDRHVEDTFSKAFLCDGYLVEQVGRIRRFVIPSHRDKDGTPFCP 295
+V VHDVD+ V+D FS AFLC GYL E VG +RRF IPSH K+G PFCP
Sbjct: 262 PAAETETDVVVHDVDKPVQDRFSTAFLCGGYLKEGVGNLRRFAIPSH--KEGMPFCP 316
>Os06g0687600 Protein of unknown function DUF579, plant family protein
Length = 336
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 129/231 (55%), Gaps = 6/231 (2%)
Query: 69 LPAAVAQAMVHYATA--NVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWAALNH 126
LP V A+V YA+A N T ++ V++ RAPCNFLVFGLG ++ +W ALNH
Sbjct: 97 LPGYVFDALVQYASAGGNSTASMPGGDVRAIAAVVKRRAPCNFLVFGLGGETPLWRALNH 156
Query: 127 GGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELI-ALRHEPACTSQPDLXXX 185
GGRTVFL+E+ +++ ++ HPGLE+Y V Y T V + +L+ A R + +P +
Sbjct: 157 GGRTVFLDENQYYVSHLEGRHPGLEAYDVVYTTTVREFPDLLDAARAARSAECRP-VQNL 215
Query: 186 XXXSCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYXXXXXXXXXXXXXXXX 245
CRLA+ LP ++V WD+I+VD P G+T SPGRM AI+
Sbjct: 216 LYSDCRLAINDLPNQLYDVAWDIILVDGPRGYTAASPGRMSAIFTAGVMARSRAEKGAET 275
Query: 246 EVFVHDVDRHVEDTFSKAFLCDGYLVEQVG--RIRRFVIPSHRDKDGTPFC 294
+V VHD +R VE S+ FLC+ VE+ + FV+P RD FC
Sbjct: 276 DVLVHDYEREVERACSREFLCEENRVEETSTRSLAHFVVPGGRDLRRETFC 326
>Os04g0649900 Protein of unknown function DUF579, plant family protein
Length = 318
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 120/210 (57%), Gaps = 4/210 (1%)
Query: 69 LPAAVAQAMVHYAT-ANVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWAALNHG 127
LP V A+VH+A+ +N T + + +I VL+ R PCN LVFGLG +S +W ALNHG
Sbjct: 74 LPLPVFDALVHFASISNATHRMSDTDIRAISAVLRARGPCNLLVFGLGAESPLWLALNHG 133
Query: 128 GRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELI-ALRHEPACTSQPDLXXXX 186
GRTVFLEE+ ++ ++ HPGLE+Y V+Y T+V D +L+ A R A +P +
Sbjct: 134 GRTVFLEENEFYVKYLEPRHPGLEAYDVSYTTKVRDFRDLLDAARASRAAECRP-IQNLL 192
Query: 187 XXSCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYXXXXXXXXXXXXXXX-X 245
CRLA+ LP ++V WD++++D P+GW P SPGRM +I+
Sbjct: 193 FSECRLAINDLPNDLYDVAWDIVLIDGPSGWNPTSPGRMPSIFTTAVLARTGATAAKGPT 252
Query: 246 EVFVHDVDRHVEDTFSKAFLCDGYLVEQVG 275
+V VHD +E SK FLCD V G
Sbjct: 253 DVLVHDFQFELEQVLSKEFLCDENRVAGSG 282
>Os11g0490100 Protein of unknown function DUF579, plant family protein
Length = 302
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 122/221 (55%), Gaps = 9/221 (4%)
Query: 71 AAVAQAMVHYATANVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWAALNHGGRT 130
AA+A A V YAT PQQ+ AEI +SL VL+ RAP LVFGLG DS +W ALN GG T
Sbjct: 58 AALADAAVRYATTPTVPQQSRAEISLSLAVLRRRAPLRLLVFGLGHDSPLWHALNPGGAT 117
Query: 131 VFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELIA-LRHEPACTSQPDLXXXX--- 186
VFLEED SW + V+ P L + VAY TR+ AD L+A + P+C
Sbjct: 118 VFLEEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATYKDHPSCLPGGGGNGGGDVP 177
Query: 187 ----XXSCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYXXXXXXXXXXXXX 242
C LAL LP +E EWD++M+DAP G+ +PGRM A
Sbjct: 178 RVRGNAECPLALHNLPAEVYEKEWDMVMIDAPKGYFASAPGRM-AAVWTAAAMARGRRGE 236
Query: 243 XXXEVFVHDVDRHVEDTFSKAFLCDGYLVEQVGRIRRFVIP 283
+VF+HDVDR VE +++ FLC+ + V GR+ F IP
Sbjct: 237 GDTDVFLHDVDRRVEKAYAEEFLCERFRVGATGRLWHFRIP 277
>Os02g0158500 Protein of unknown function DUF579, plant family protein
Length = 258
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 69 LPAAVAQAMVHYATANVT------PQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWA 122
LPA V A+V YA A P++ I VL+ RAPC LVFGLG ++ +W
Sbjct: 108 LPAYVFDALVQYAAAAGANATASMPEEDVRAIA---SVLRRRAPCRLLVFGLGAETPLWR 164
Query: 123 ALNHGGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELI-ALRHEPACTSQPD 181
ALNHGGRTVFL+E+ ++A V+ PGLE+Y V+Y T V + +L+ A R + +P
Sbjct: 165 ALNHGGRTVFLDENPFYVAHVEGALPGLEAYDVSYATAVREFPDLLDAARAAQSADCRP- 223
Query: 182 LXXXXXXSCRLALRGLPPVFHEVEWDLIMVDAPTG 216
+ CRLA+ LP ++V WD+I+VD P+G
Sbjct: 224 VQNLLFSDCRLAINDLPNQLYDVSWDVILVDGPSG 258
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,399,631
Number of extensions: 292862
Number of successful extensions: 504
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 6
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)