FiT-DB / Search/ Help/ Sample detail

Os04g0649900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF579, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.38 (0.0425) R2 : 0.773
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.06 (0.111) R2dC : 0.794 R2C : 0.329
β3 : -3.51 (0.129) R2dE : 0.445 R2E : -0.0211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0579 (0.0899) R2dN8 : 0.000291 R2N8 : -0.00255
σ : 0.798
deviance : 293.35
__
_____
C
peak time of C : 13.3
E
wheather : temperature
threshold : 8.41
memory length : 315
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.35
open length of G : 9.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.82 0.787 7.41 -0.596 3.97 -3.34 0.496 -2.32 -0.0261 13.5 9.75 323 1.33 8.84
288.78 0.791 7.4 -0.489 4.11 -3.43 0.00561 -- 0.039 13.4 8.213 324 1.35 8.93
281.13 0.781 7.41 -0.53 4 -3.4 -- -1.83 -0.0112 13.4 7.847 319 1.37 8.87
288.22 0.791 7.39 -0.458 4.06 -3.51 -- -- 0.000603 13.3 7.798 317 1.35 8.95
659.47 1.2 7.47 -0.71 -- -2.95 -- -0.812 -0.00865 -- -5.431 206 0.0166 8.28
349.72 0.877 7.53 -0.693 4.11 -- 0.734 -- -0.226 16.1 -- -- -- --
351.22 0.878 7.53 -0.684 4.11 -- -- -- -0.222 16.1 -- -- -- --
661.3 1.2 7.44 -0.583 -- -2.94 -- -- 0.05 -- -7.816 196 0.0167 8.25
293.35 0.798 7.38 -- 4.06 -3.51 -- -- 0.0579 13.3 8.41 315 1.35 9.03
1268.34 1.66 7.51 -0.85 -- -- -- -- -0.332 -- -- -- -- --
363.57 0.892 7.51 -- 4.12 -- -- -- -0.146 16.1 -- -- -- --
663.35 1.2 7.42 -- -- -2.98 -- -- 0.0456 -- -53.5 233 0.0136 7.4
1287.42 1.67 7.49 -- -- -- -- -- -0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 286.55 temperature 10.0 270 > th dose dependent rect. 2 8
4 290.46 atmosphere 1010.0 270 < th dose independent rect. 2 9
6 292.45 temperature 25.0 720 < th dose dependent rect. 5 2
28 297.11 temperature 15.0 720 > th dose dependent rect. 2 4
41 298.09 radiation 10.0 30 < th dose independent rect. 5 19
42 298.13 atmosphere 995.0 10 > th dose dependent rect. 24 17
45 298.39 atmosphere 1000.0 90 > th dose independent rect. 23 18
56 299.23 atmosphere 1000.0 270 > th dose independent rect. 21 18
66 299.99 temperature 20.0 270 > th dose independent rect. 21 5
67 299.99 atmosphere 1010.0 270 < th dose independent rect. 3 18
75 300.49 atmosphere 995.0 270 > th dose dependent rect. 22 17
89 300.83 temperature 20.0 270 > th dose independent rect. 23 2
107 301.54 atmosphere 1015.0 270 < th dose dependent rect. 2 8
111 301.65 radiation 20.0 270 < th dose independent rect. 16 16
113 301.72 wind 9.0 270 < th dose dependent rect. 2 9
121 301.89 wind 5.0 270 < th dose independent rect. 2 8
122 301.92 temperature 30.0 270 < th dose dependent rect. 7 8
123 301.95 radiation 20.0 30 < th dose dependent rect. 5 19
132 302.13 atmosphere 1000.0 10 > th dose independent rect. 24 17
158 302.86 wind 9.0 43200 < th dose independent rect. 15 2
159 302.86 atmosphere 995.0 270 > th dose dependent rect. 15 6
161 302.87 wind 9.0 43200 > th dose dependent rect. 13 7
162 302.94 humidity 50.0 270 > th dose independent rect. 16 15
163 302.94 radiation 10.0 90 < th dose independent rect. 3 21
164 302.96 temperature 20.0 720 < th dose independent rect. 5 2
167 303.07 humidity 60.0 270 > th dose independent rect. 2 9
168 303.08 temperature 30.0 90 < th dose independent rect. 17 6
170 303.12 humidity 50.0 270 > th dose independent rect. 15 6
185 303.37 wind 9.0 43200 > th dose independent rect. 13 6
191 303.51 atmosphere 995.0 90 > th dose dependent rect. 17 6
195 303.57 atmosphere 1010.0 30 < th dose independent rect. 5 18
200 303.74 radiation 40.0 270 < th dose independent rect. 13 9
210 303.90 temperature 30.0 720 < th dose dependent sin 6 NA
216 304.00 humidity 60.0 90 > th dose independent rect. 17 6
219 304.06 precipitation 0.1 270 < th dose independent rect. 16 15
220 304.06 precipitation 0.1 270 < th dose dependent rect. 16 15
222 304.07 temperature 30.0 90 < th dose independent rect. 23 17
236 304.30 wind 9.0 43200 > th dose independent rect. 11 8
237 304.31 atmosphere 1010.0 14400 > th dose independent rect. 11 1
238 304.31 atmosphere 1010.0 14400 < th dose independent rect. 11 1
246 304.46 temperature 10.0 30 > th dose dependent rect. 5 18
247 304.47 temperature 30.0 270 < th dose independent rect. 15 6
249 304.50 radiation 40.0 270 < th dose dependent rect. 16 16
250 304.51 wind 9.0 43200 < th dose independent rect. 13 6
255 304.54 wind 1.0 270 > th dose independent rect. 7 9
263 304.64 wind 9.0 43200 > th dose independent rect. 15 2
268 304.70 atmosphere 1010.0 14400 > th dose independent rect. 14 2
272 304.72 temperature 30.0 270 < th dose independent rect. 16 15
274 304.73 atmosphere 1010.0 14400 > th dose independent rect. 10 6
292 304.95 wind 7.0 270 < th dose independent rect. 16 15
296 305.02 atmosphere 1010.0 14400 < th dose independent rect. 15 1
298 305.03 atmosphere 1010.0 14400 > th dose independent rect. 10 10
312 305.12 atmosphere 1010.0 14400 > th dose independent rect. 14 6
333 305.27 atmosphere 1010.0 14400 < th dose independent rect. 10 6
340 305.30 atmosphere 1010.0 14400 < th dose independent rect. 18 1
343 305.32 humidity 50.0 4320 > th dose independent rect. 19 15
371 305.44 wind 9.0 43200 < th dose independent rect. 11 8
375 305.45 atmosphere 1010.0 14400 > th dose independent sin 22 NA
378 305.45 precipitation 0.1 270 < th dose independent rect. 2 8
379 305.45 temperature 15.0 270 > th dose independent rect. 2 9
381 305.45 precipitation 0.1 270 < th dose dependent rect. 2 8
395 305.49 atmosphere 995.0 270 > th dose independent rect. 15 6
409 305.53 atmosphere 1010.0 14400 > th dose independent rect. 3 17
411 305.53 atmosphere 1010.0 14400 > th dose dependent rect. 11 1
412 305.53 radiation 30.0 90 < th dose dependent rect. 15 8
416 305.54 humidity 50.0 270 > th dose independent rect. 2 19
417 305.54 radiation 10.0 43200 < th dose dependent rect. 15 15
425 305.56 atmosphere 1010.0 14400 < th dose independent rect. 10 10
444 305.61 atmosphere 1010.0 14400 > th dose independent rect. 4 13
449 305.61 atmosphere 1010.0 14400 > th dose dependent rect. 8 4
486 305.66 atmosphere 1010.0 14400 > th dose dependent rect. 8 1
505 305.70 wind 3.0 90 > th dose independent rect. 1 16
537 305.77 atmosphere 1010.0 14400 < th dose independent rect. 14 6
538 305.77 radiation 40.0 43200 < th dose dependent rect. 16 13
545 305.79 radiation 40.0 43200 < th dose dependent rect. 16 1
555 305.81 humidity 70.0 43200 > th dose independent rect. 7 2
572 305.82 radiation 1.0 43200 > th dose dependent rect. 16 1
574 305.83 radiation 10.0 43200 < th dose dependent rect. 16 1
576 305.83 radiation 1.0 43200 > th dose dependent rect. 16 13
593 305.86 atmosphere 1010.0 14400 > th dose independent rect. 10 20
597 305.86 radiation 40.0 43200 < th dose dependent rect. 16 9
598 305.86 radiation 40.0 43200 < th dose dependent rect. 16 11
620 305.89 atmosphere 1010.0 14400 > th dose independent rect. 18 2
631 305.90 radiation 1.0 43200 > th dose dependent rect. 16 3
684 305.95 wind 9.0 270 < th dose independent rect. 15 6
739 306.01 atmosphere 1010.0 14400 > th dose independent no NA NA
741 306.01 atmosphere 1010.0 14400 < th dose independent rect. 10 19
745 306.01 atmosphere 1010.0 14400 > th dose independent rect. 18 23
760 306.02 atmosphere 1010.0 14400 > th dose independent rect. 13 23
785 306.05 atmosphere 1010.0 14400 < th dose independent sin 21 NA
789 306.05 atmosphere 1010.0 14400 < th dose independent rect. 2 18
835 306.09 wind 9.0 43200 > th dose dependent rect. 14 3
936 306.20 atmosphere 1010.0 14400 < th dose independent rect. 2 14