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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0490100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF579, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.26 (0.0449) R2 : 0.874
β1 : -1.01 (0.172) R2dD : 0.011 R2D : 0.00858
β2 : 4.13 (0.169) R2dC : 0.353 R2C : 0.694
β3 : 2.87 (0.181) R2dE : 0.153 R2E : 0.488
β4 : -3.82 (0.737) R2dD*C : 0.0143 R2D*C : -0.0161
β5 : 4.15 (0.846) R2dD*E : 0.0137 R2D*E : 0.0175
γ1 : 0.0875 (0.0955) R2dN8 : 0.000317 R2N8 : -0.000182
σ : 0.837
deviance : 317.05
__
_____
C
peak time of C : 6.18
E
wheather : wind
threshold : 5.093
memory length : 261
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.983
open length of G : 4.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.05 0.837 6.26 -1.01 4.13 2.87 -3.82 4.15 0.0875 6.18 5.093 261 0.983 4.03
333.35 0.85 6.3 -1.26 4.05 3.08 -1.37 -- 0.00427 6.25 5.292 255 0.947 4.17
344.69 0.865 6.19 -0.882 4.21 2.95 -- 2.96 0.217 6.2 4.79 240 1.23 3.94
336.93 0.855 6.28 -1.29 4.06 3.09 -- -- 0.0308 6.28 5.3 255 0.9 4.3
517.86 1.06 6.42 -1.27 -- 5.26 -- 0.828 -0.124 -- 18.38 491 0.0167 4.47
507.74 1.06 6.22 -1.12 6.17 -- -0.765 -- 0.128 5.9 -- -- -- --
509.17 1.06 6.22 -1.12 6.16 -- -- -- 0.131 5.9 -- -- -- --
513.08 1.05 6.41 -1.34 -- 5.09 -- -- -0.213 -- 6.499 491 0.0166 4.37
380.88 0.909 6.26 -- 4.09 3.03 -- -- 0.144 6.28 5.3 251 0.879 4.37
2478.96 2.33 6.32 -0.937 -- -- -- -- 0.273 -- -- -- -- --
542.38 1.09 6.19 -- 6.15 -- -- -- 0.256 5.91 -- -- -- --
555.32 1.1 6.38 -- -- 5.13 -- -- -0.008 -- 6.906 493 0.00431 4.41
2502.13 2.33 6.3 -- -- -- -- -- 0.377 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 318.14 wind 5.0 270 < th dose independent rect. 1 4
3 323.16 precipitation 0.1 270 < th dose independent rect. 1 4
4 323.16 precipitation 0.1 270 < th dose dependent rect. 1 4
5 323.56 radiation 1.0 270 < th dose dependent rect. 1 4
6 323.82 temperature 15.0 270 > th dose independent rect. 5 20
10 323.99 radiation 1.0 270 < th dose independent rect. 1 4
14 324.01 temperature 10.0 270 > th dose independent rect. 1 4
16 324.01 temperature 30.0 270 < th dose independent rect. 1 4
17 324.01 humidity 50.0 270 > th dose independent rect. 1 4
20 324.01 atmosphere 995.0 270 > th dose independent rect. 1 4
21 324.01 atmosphere 1010.0 270 < th dose independent rect. 1 4
27 324.46 wind 9.0 270 < th dose independent rect. 5 20
28 325.21 wind 5.0 270 < th dose independent rect. 24 6
29 326.03 temperature 10.0 270 > th dose dependent rect. 1 4
30 327.06 wind 1.0 270 > th dose independent rect. 1 4
31 327.33 wind 9.0 270 < th dose dependent rect. 1 4
34 329.32 precipitation 0.1 270 < th dose independent rect. 24 6
35 329.32 precipitation 0.1 270 < th dose dependent rect. 24 6
36 329.43 atmosphere 1010.0 270 < th dose independent rect. 24 6
37 329.51 temperature 10.0 270 > th dose dependent rect. 24 6
38 330.36 radiation 10.0 270 < th dose independent rect. 24 6
39 330.39 temperature 15.0 270 > th dose independent rect. 6 18
42 330.74 temperature 10.0 270 > th dose independent rect. 24 6
43 330.74 temperature 30.0 270 < th dose independent rect. 24 6
44 330.74 humidity 50.0 270 > th dose independent rect. 24 6
47 330.74 atmosphere 995.0 270 > th dose independent rect. 24 6
53 330.85 radiation 40.0 270 < th dose dependent rect. 24 6
57 331.19 wind 9.0 270 < th dose independent rect. 6 18
61 332.47 radiation 1.0 270 < th dose dependent rect. 5 20
72 334.21 humidity 50.0 270 > th dose dependent rect. 1 4
73 334.29 wind 9.0 270 < th dose dependent rect. 24 6
100 335.29 radiation 1.0 270 < th dose dependent rect. 11 14
110 336.43 precipitation 0.1 270 < th dose independent rect. 5 20
111 336.43 precipitation 0.1 270 < th dose dependent rect. 5 20
116 336.85 radiation 1.0 270 < th dose independent rect. 5 20
119 337.11 temperature 10.0 270 > th dose dependent rect. 24 19
120 337.22 radiation 1.0 270 < th dose independent rect. 11 14
160 339.34 temperature 30.0 270 < th dose independent rect. 19 15
194 339.92 temperature 10.0 270 > th dose dependent rect. 3 1
232 340.90 precipitation 0.1 270 < th dose independent rect. 6 18
233 340.90 precipitation 0.1 270 < th dose dependent rect. 6 18
268 342.52 radiation 30.0 90 < th dose dependent rect. 3 4
273 342.85 temperature 10.0 90 > th dose dependent rect. 3 18
300 343.15 humidity 50.0 270 > th dose dependent rect. 24 6
307 343.31 wind 1.0 270 > th dose independent rect. 3 1
309 343.37 humidity 50.0 270 > th dose dependent rect. 18 6
317 343.98 radiation 40.0 270 < th dose independent rect. 19 15
341 344.37 temperature 10.0 270 > th dose independent rect. 10 9
342 344.37 atmosphere 1015.0 270 < th dose independent rect. 10 9
343 344.37 temperature 10.0 270 > th dose independent rect. 19 15
344 344.37 atmosphere 995.0 270 > th dose independent rect. 19 15
346 344.38 wind 9.0 270 < th dose independent rect. 19 15
375 345.14 wind 9.0 270 < th dose independent rect. 10 9
406 345.50 humidity 50.0 270 > th dose independent rect. 19 15
440 345.73 wind 7.0 10 < th dose dependent rect. 3 4
460 346.66 wind 5.0 10 < th dose independent rect. 3 4
464 346.77 precipitation 0.1 270 < th dose independent rect. 10 9
465 346.77 precipitation 0.1 270 < th dose dependent rect. 10 9
487 347.32 temperature 30.0 270 < th dose independent rect. 18 7
495 347.84 humidity 60.0 270 > th dose independent rect. 18 7
508 348.10 radiation 10.0 10 < th dose independent rect. 3 4
528 348.94 wind 1.0 270 > th dose independent rect. 10 9
563 349.90 temperature 30.0 270 < th dose independent rect. 5 19
574 350.31 radiation 40.0 10 < th dose dependent rect. 3 4
579 350.38 precipitation 0.1 270 < th dose independent rect. 1 17
580 350.38 temperature 10.0 270 > th dose dependent rect. 10 10
581 350.38 precipitation 0.1 270 < th dose dependent rect. 1 17
593 350.77 humidity 60.0 14400 > th dose independent rect. 3 4
598 350.83 wind 9.0 270 < th dose independent rect. 1 17
599 350.85 temperature 10.0 270 > th dose independent rect. 18 7
601 350.85 radiation 20.0 270 < th dose independent rect. 18 7
604 350.85 temperature 10.0 270 > th dose independent rect. 1 17
605 350.85 atmosphere 1015.0 270 < th dose independent rect. 1 17
609 350.95 wind 9.0 270 < th dose independent rect. 18 7
610 350.98 temperature 15.0 10 > th dose independent rect. 7 20
614 351.18 temperature 10.0 10 > th dose dependent rect. 3 4
624 351.39 atmosphere 995.0 270 > th dose independent rect. 5 20
628 351.50 temperature 10.0 10 > th dose independent rect. 3 4
630 351.50 temperature 30.0 10 < th dose independent rect. 3 4
631 351.50 humidity 50.0 10 > th dose independent rect. 3 4
634 351.50 atmosphere 995.0 10 > th dose independent rect. 3 4
635 351.50 atmosphere 1015.0 10 < th dose independent rect. 3 4
649 351.69 precipitation 0.1 270 < th dose independent rect. 24 19
650 351.69 precipitation 0.1 270 < th dose dependent rect. 24 19
661 351.93 wind 9.0 10 < th dose independent rect. 7 20
664 351.96 wind 9.0 270 < th dose independent rect. 24 19
665 351.99 wind 9.0 270 < th dose independent rect. 19 5
666 351.99 atmosphere 1015.0 270 < th dose independent rect. 24 19
667 352.00 temperature 10.0 270 > th dose independent rect. 19 5
670 352.00 atmosphere 995.0 270 > th dose independent rect. 19 5
676 352.00 temperature 10.0 270 > th dose independent rect. 24 19
688 352.10 atmosphere 995.0 270 > th dose independent rect. 18 7
715 352.72 humidity 50.0 270 > th dose independent rect. 5 20
722 352.87 humidity 50.0 10 > th dose dependent rect. 21 6
746 353.43 atmosphere 995.0 270 > th dose independent rect. 6 18
755 353.77 atmosphere 1015.0 270 < th dose dependent rect. 1 4
776 354.40 precipitation 0.1 270 < th dose independent rect. 18 7
777 354.40 precipitation 0.1 270 < th dose dependent rect. 18 7
785 354.58 atmosphere 995.0 270 > th dose independent rect. 1 17
792 354.99 atmosphere 995.0 270 > th dose independent rect. 24 19
799 355.16 precipitation 0.1 270 < th dose independent rect. 19 5
801 355.16 precipitation 0.1 270 < th dose dependent rect. 19 5
819 355.70 precipitation 0.1 270 < th dose independent rect. 19 15
820 355.70 precipitation 0.1 270 < th dose dependent rect. 19 15
832 356.01 humidity 50.0 10 > th dose dependent rect. 3 4
866 356.69 wind 9.0 270 < th dose independent rect. 14 15
877 356.96 precipitation 0.1 10 < th dose independent rect. 3 18
878 356.96 precipitation 0.1 10 < th dose dependent rect. 3 18
909 357.26 humidity 50.0 270 > th dose dependent rect. 21 2
916 357.45 wind 9.0 270 < th dose dependent rect. 6 18
918 357.51 precipitation 0.1 10 < th dose independent rect. 7 20
919 357.51 precipitation 0.1 10 < th dose dependent rect. 7 20
957 357.87 atmosphere 995.0 270 > th dose independent rect. 11 8
984 358.24 temperature 10.0 270 > th dose independent rect. 5 9
985 358.24 atmosphere 995.0 270 > th dose independent rect. 5 9
986 358.24 atmosphere 1015.0 270 < th dose independent rect. 5 9
987 358.24 temperature 10.0 270 > th dose independent rect. 14 15
991 358.33 precipitation 0.1 270 < th dose independent rect. 5 9
992 358.33 precipitation 0.1 270 < th dose dependent rect. 5 9