BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0490100 Os11g0490100|AK108872
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0490100 Protein of unknown function DUF579, plant fami... 357 5e-99
Os12g0204500 Protein of unknown function DUF579, plant fami... 140 1e-33
Os06g0687600 Protein of unknown function DUF579, plant fami... 114 8e-26
Os04g0649900 Protein of unknown function DUF579, plant fami... 102 5e-22
Os11g0242600 Protein of unknown function DUF579, plant fami... 90 2e-18
Os02g0158500 Protein of unknown function DUF579, plant fami... 74 2e-13
>Os11g0490100 Protein of unknown function DUF579, plant family protein
Length = 302
Score = 357 bits (917), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 191/302 (63%), Positives = 191/302 (63%)
Query: 1 MKMPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPCLPAVTAPSGSGYSPPGXXXX 60
MKMPGR MPCLPAVTAPSGSGYSPPG
Sbjct: 1 MKMPGRLLAAGAAALLVAASVMVATLLTAPLPFLPSLMPCLPAVTAPSGSGYSPPGLAAL 60
Query: 61 XXXXVRYATTPTVPQQSRAEIXXXXXXXXXXXXXXXXXFGLGHDSPLWHALNPGGATVFL 120
VRYATTPTVPQQSRAEI FGLGHDSPLWHALNPGGATVFL
Sbjct: 61 ADAAVRYATTPTVPQQSRAEISLSLAVLRRRAPLRLLVFGLGHDSPLWHALNPGGATVFL 120
Query: 121 EEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATYKDHPSCLXXXXXXXXXXXXXXX 180
EEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATYKDHPSCL
Sbjct: 121 EEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATYKDHPSCLPGGGGNGGGDVPRVR 180
Query: 181 XXAECPLALHNLPAEVYEKEWDMVMIDAPKGYFASAPGRMXXXXXXXXXXXXXXXXXDTD 240
AECPLALHNLPAEVYEKEWDMVMIDAPKGYFASAPGRM DTD
Sbjct: 181 GNAECPLALHNLPAEVYEKEWDMVMIDAPKGYFASAPGRMAAVWTAAAMARGRRGEGDTD 240
Query: 241 VFLHDVDRRVEKAYAEEFLCERFRVGATGRLWHFRIPPXXXXXXXXXXXXXXXXXXXXXP 300
VFLHDVDRRVEKAYAEEFLCERFRVGATGRLWHFRIPP P
Sbjct: 241 VFLHDVDRRVEKAYAEEFLCERFRVGATGRLWHFRIPPASRRGNGTAAAGGAGAGDGRRP 300
Query: 301 FC 302
FC
Sbjct: 301 FC 302
>Os12g0204500 Protein of unknown function DUF579, plant family protein
Length = 295
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 107/214 (50%), Gaps = 9/214 (4%)
Query: 65 VRYATTPTVPQQSRAEIXXXXXXXXXXXXXXXXXFGLGHDSPLWHALNPGGATVFLEEDP 124
V YAT PQQ+ AEI FGLG DS +W ALN GG TVFLEED
Sbjct: 78 VHYATANVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWAALNHGGRTVFLEEDA 137
Query: 125 SWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATYKDHPSCLXXXXXXXXXXXXXXXXXAE 184
SW + V+ P L + VAY TR+ AD L+A + P+C A
Sbjct: 138 SWIASVKAGHPGLESYHVAYDTRVTDADELIA-LRHEPAC-------TSQPDLAAAAAAS 189
Query: 185 CPLALHNLPAEVYEKEWDMVMIDAPKGYFASAPGRMXXXXXXXXXXXXXX-XXXDTDVFL 243
C LAL LP +E EWD++M+DAP G+ +PGRM T+VF+
Sbjct: 190 CRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYTAGMAARARTPGAGATEVFV 249
Query: 244 HDVDRRVEKAYAEEFLCERFRVGATGRLWHFRIP 277
HDVDR VE +++ FLC+ + V GR+ F IP
Sbjct: 250 HDVDRHVEDTFSKAFLCDGYLVEQVGRIRRFVIP 283
>Os06g0687600 Protein of unknown function DUF579, plant family protein
Length = 336
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 15/184 (8%)
Query: 99 FGLGHDSPLWHALNPGGATVFLEEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATY 158
FGLG ++PLW ALN GG TVFL+E+ + S + G+ P L + V Y T T
Sbjct: 142 FGLGGETPLWRALNHGGRTVFLDENQYYVSHLEGRHPGLEAYDVVYTT----------TV 191
Query: 159 KDHPSCLXXXXXXXXXXX--XXXXXXAECPLALHNLPAEVYEKEWDMVMIDAPKGYFASA 216
++ P L ++C LA+++LP ++Y+ WD++++D P+GY A++
Sbjct: 192 REFPDLLDAARAARSAECRPVQNLLYSDCRLAINDLPNQLYDVAWDIILVDGPRGYTAAS 251
Query: 217 PGRMXXX-XXXXXXXXXXXXXXDTDVFLHDVDRRVEKAYAEEFLCERFRV--GATGRLWH 273
PGRM +TDV +HD +R VE+A + EFLCE RV +T L H
Sbjct: 252 PGRMSAIFTAGVMARSRAEKGAETDVLVHDYEREVERACSREFLCEENRVEETSTRSLAH 311
Query: 274 FRIP 277
F +P
Sbjct: 312 FVVP 315
>Os04g0649900 Protein of unknown function DUF579, plant family protein
Length = 318
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
Query: 99 FGLGHDSPLWHALNPGGATVFLEEDPSWYSVVRGQSPFLRGHLVAYRTRL-DHADRLLAT 157
FGLG +SPLW ALN GG TVFLEE+ + + + P L + V+Y T++ D D L A
Sbjct: 118 FGLGAESPLWLALNHGGRTVFLEENEFYVKYLEPRHPGLEAYDVSYTTKVRDFRDLLDAA 177
Query: 158 YKDHPSCLXXXXXXXXXXXXXXXXXAECPLALHNLPAEVYEKEWDMVMIDAPKGYFASAP 217
+ +EC LA+++LP ++Y+ WD+V+ID P G+ ++P
Sbjct: 178 RASRAA---------ECRPIQNLLFSECRLAINDLPNDLYDVAWDIVLIDGPSGWNPTSP 228
Query: 218 GRMXXXXXXXXXXXXXXXXXD--TDVFLHDVDRRVEKAYAEEFLCERFRVGATG--RLWH 273
GRM TDV +HD +E+ ++EFLC+ RV +G L H
Sbjct: 229 GRMPSIFTTAVLARTGATAAKGPTDVLVHDFQFELEQVLSKEFLCDENRVAGSGTPSLGH 288
Query: 274 FRIPP 278
F + P
Sbjct: 289 FVVRP 293
>Os11g0242600 Protein of unknown function DUF579, plant family protein
Length = 316
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Query: 99 FGLGHDSPLWHALNPGGATVFLEEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATY 158
FGLGH + LW ALN GG TVFLEED + S S + + VAY AD LLA
Sbjct: 130 FGLGHGAALWAALNHGGRTVFLEEDDALVSGASPASLAIEAYRVAYLASAADADELLA-L 188
Query: 159 KDHPSCLXXXXXXXXXXXXXXXXXAECPLALHNLPAEVYEKEWDMVMID--APKGYFASA 216
+D C + C LA+ LPA YE EWD++++D AP +A
Sbjct: 189 RDSEHC---TGAAATQLSPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAPPPPTTTA 245
Query: 217 PGRMXXXXXXXXXXXXXXXXXDTDVFLHDVDRRVEKAYAEEFLCERFRVGATGRLWHFRI 276
+TDV +HDVD+ V+ ++ FLC + G L F I
Sbjct: 246 MMGAIYTAAVAARARRPAAETETDVVVHDVDKPVQDRFSTAFLCGGYLKEGVGNLRRFAI 305
Query: 277 P 277
P
Sbjct: 306 P 306
>Os02g0158500 Protein of unknown function DUF579, plant family protein
Length = 258
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 99 FGLGHDSPLWHALNPGGATVFLEEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLATY 158
FGLG ++PLW ALN GG TVFL+E+P + + V G P L + V+Y T + LL
Sbjct: 154 FGLGAETPLWRALNHGGRTVFLDENPFYVAHVEGALPGLEAYDVSYATAVREFPDLLDAA 213
Query: 159 KDHPSCLXXXXXXXXXXXXXXXXXAECPLALHNLPAEVYEKEWDMVMIDAPKG 211
+ S ++C LA+++LP ++Y+ WD++++D P G
Sbjct: 214 RAAQS--------ADCRPVQNLLFSDCRLAINDLPNQLYDVSWDVILVDGPSG 258
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,624,486
Number of extensions: 244422
Number of successful extensions: 351
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 6
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)