BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0197400 Os12g0197400|J033051A07
(785 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0197400 GTP-binding protein, HSR1-related domain conta... 1458 0.0
Os05g0151400 Chloroplast protein import component Toc86/159... 466 e-131
Os03g0835100 Similar to Chloroplast protein import componen... 425 e-119
Os10g0548800 Similar to Chloroplast outer envelope protein-... 257 2e-68
Os01g0356800 AIG1 domain containing protein 171 1e-42
Os03g0240500 Similar to Toc34-2 protein 104 3e-22
AK107288 76 8e-14
>Os12g0197400 GTP-binding protein, HSR1-related domain containing protein
Length = 785
Score = 1458 bits (3774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/785 (90%), Positives = 713/785 (90%)
Query: 1 MMSFRDWISYRLGSSVLSARPFSLSAHHXXXXXXXXXXXXXVMQNEIVETVSANRFPSND 60
MMSFRDWISYRLGSSVLSARPFSLSAHH VMQNEIVETVSANRFPSND
Sbjct: 1 MMSFRDWISYRLGSSVLSARPFSLSAHHDGAAAQPGGDGDGVMQNEIVETVSANRFPSND 60
Query: 61 IRASDSEVTSSPSYEPDHDSTKSDPLKHVEALQIKFLRLVHRTGVPPTTDVVAQVLYRLH 120
IRASDSEVTSSPSYEPDHDSTKSDPLKHVEALQIKFLRLVHRTGVPPTTDVVAQVLYRLH
Sbjct: 61 IRASDSEVTSSPSYEPDHDSTKSDPLKHVEALQIKFLRLVHRTGVPPTTDVVAQVLYRLH 120
Query: 121 LANLIKAGESDSKRTNLAINKARVIAAEQEAXXXXXXXXXXXXXXXXKTGVGKSATINSI 180
LANLIKAGESDSKRTNLAINKARVIAAEQEA KTGVGKSATINSI
Sbjct: 121 LANLIKAGESDSKRTNLAINKARVIAAEQEAPGGPDLDLPLRILLLGKTGVGKSATINSI 180
Query: 181 FDEPKVATNALAPATERIRRIDGTIKGIRVTVIDTPGLLPHYHRQRKNRKILHAVKRFIK 240
FDEPKVATNALAPATERIRRIDGTIKGIRVTVIDTPGLLPHYHRQRKNRKILHAVKRFIK
Sbjct: 181 FDEPKVATNALAPATERIRRIDGTIKGIRVTVIDTPGLLPHYHRQRKNRKILHAVKRFIK 240
Query: 241 RSPPDIVLYFERLDHINSRYCEYPLLKLITDILGSSMWFNTVLVMTHCSSSPPEGPDGYP 300
RSPPDIVLYFERLDHINSRYCEYPLLKLITDILGSSMWFNTVLVMTHCSSSPPEGPDGYP
Sbjct: 241 RSPPDIVLYFERLDHINSRYCEYPLLKLITDILGSSMWFNTVLVMTHCSSSPPEGPDGYP 300
Query: 301 LEYDSYARYCKNVVQRHIQVAASNTQMENPVVLVDNHPMCRRNTKGERVLPNGKVWVSEX 360
LEYDSYARYCKNVVQRHIQVAASNTQMENPVVLVDNHPMCRRNTKGERVLPNGKVWVSE
Sbjct: 301 LEYDSYARYCKNVVQRHIQVAASNTQMENPVVLVDNHPMCRRNTKGERVLPNGKVWVSEL 360
Query: 361 XXXXXXXXXXAEANSLLKFQDSFLLSQANTRXXXXXXXXXXXXXXXXXXXXEDVGIDMTE 420
AEANSLLKFQDSFLLSQANTR EDVGIDMTE
Sbjct: 361 LLLCGATKLLAEANSLLKFQDSFLLSQANTRLPSLPHLLSSLLKPNPSSRSEDVGIDMTE 420
Query: 421 VSDDEDESDQLPPFRVXXXXXXXXXXXXQRSAYLDELDYRETLYLKKQWKEGIRRQKLVE 480
VSDDEDESDQLPPFRV QRSAYLDELDYRETLYLKKQWKEGIRRQKLVE
Sbjct: 421 VSDDEDESDQLPPFRVLKKSEYEKLSKEQRSAYLDELDYRETLYLKKQWKEGIRRQKLVE 480
Query: 481 AQNVDASNAVGDDYEESVSPEVVHMSDMEIPSSFDSDYPVHRYRYLITDDMVFRPVLDPQ 540
AQNVDASNAVGDDYEESVSPEVVHMSDMEIPSSFDSDYPVHRYRYLITDDMVFRPVLDPQ
Sbjct: 481 AQNVDASNAVGDDYEESVSPEVVHMSDMEIPSSFDSDYPVHRYRYLITDDMVFRPVLDPQ 540
Query: 541 GWDHDIGFDGINFEVSQDLEKNTTASIAGQMRKDKEDLYIQSECSVSYSGKNGRSLIGSM 600
GWDHDIGFDGINFEVSQDLEKNTTASIAGQMRKDKEDLYIQSECSVSYSGKNGRSLIGSM
Sbjct: 541 GWDHDIGFDGINFEVSQDLEKNTTASIAGQMRKDKEDLYIQSECSVSYSGKNGRSLIGSM 600
Query: 601 NMQTANKDLVCTVNGDARFHNLPWNTTGGGISITKFGSKYFTGAKLEDSITVGRRVQLVG 660
NMQTANKDLVCTVNGDARFHNLPWNTTGGGISITKFGSKYFTGAKLEDSITVGRRVQLVG
Sbjct: 601 NMQTANKDLVCTVNGDARFHNLPWNTTGGGISITKFGSKYFTGAKLEDSITVGRRVQLVG 660
Query: 661 NAGRMVGCGQVAHGGGLEMTFRGKDYPVREESITVAATALSFEKETVISTNLQSDFRMGR 720
NAGRMVGCGQVAHGGGLEMTFRGKDYPVREESITVAATALSFEKETVISTNLQSDFRMGR
Sbjct: 661 NAGRMVGCGQVAHGGGLEMTFRGKDYPVREESITVAATALSFEKETVISTNLQSDFRMGR 720
Query: 721 GSKVSVSANLNSRNLGRFCVKTSTSDHSEIALVAAVTLFQFFLRRRTASTDKGEQQFEFD 780
GSKVSVSANLNSRNLGRFCVKTSTSDHSEIALVAAVTLFQFFLRRRTASTDKGEQQFEFD
Sbjct: 721 GSKVSVSANLNSRNLGRFCVKTSTSDHSEIALVAAVTLFQFFLRRRTASTDKGEQQFEFD 780
Query: 781 TYSDE 785
TYSDE
Sbjct: 781 TYSDE 785
>Os05g0151400 Chloroplast protein import component Toc86/159 family protein
Length = 1306
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 276/705 (39%), Positives = 397/705 (56%), Gaps = 37/705 (5%)
Query: 89 VEALQIKFLRLVHRTGVPPTTDVVAQVLYRLHLANLIKAGESDSKRTNLA--INKARVIA 146
VE +++KFLRLV+R G P V AQVLYRL LA I+ G ++TN A ++ AR A
Sbjct: 599 VELIRVKFLRLVYRLGATPEETVAAQVLYRLSLAEGIRHG----RQTNRAFSLDNARKKA 654
Query: 147 AEQEAXXXXXXXXXXXXXXXXKTGVGKSATINSIFDEPKVATNALAPATERIRRIDGTIK 206
EA K GVGKSATINSIF E K T+A + AT +R I G +
Sbjct: 655 MLLEAEGKEELNFSCNILVLGKIGVGKSATINSIFGEEKSKTDAFSSATNSVREIVGNVD 714
Query: 207 GIRVTVIDTPGLLPHYHRQRKNRKILHAVKRFIKRSPPDIVLYFERLDHINSRYCEYPLL 266
G+++ +IDTPGL P+ Q NRKIL +VK++ KR PPDIVLY +RLD ++ + PLL
Sbjct: 715 GVQIRIIDTPGLRPNVMDQGSNRKILASVKKYTKRCPPDIVLYVDRLDSLSRDLNDLPLL 774
Query: 267 KLITDILGSSMWFNTVLVMTHCSSSPPEGPDGYPLEYDSYARYCKNVVQRHIQVAASNTQ 326
K IT +LGSS+WFN ++ +TH +S+PPEG +G P+ Y+ +++Q+ I+ AA + +
Sbjct: 775 KTITSVLGSSIWFNAIVALTHAASAPPEGLNGAPMTYEVLMAQRSHIIQQSIRQAAGDMR 834
Query: 327 MENPVVLVDNHPMCRRNTKGERVLPNGKVWVSEXXXXXXXXXXXAEANSLLKFQDS---- 382
+ NPV LV+NHP CRRN +G++VLPNG+ W + +EANSLLK QD
Sbjct: 835 LMNPVALVENHPSCRRNREGQKVLPNGQSWRHQMLLLCYSSKILSEANSLLKLQDPNPGK 894
Query: 383 -----FLLSQANTRXXXXXXXXXXXXXXXXXXXXE-DVGIDMTEVS-----DDEDESDQL 431
F E D ID+ + S +DE+E DQL
Sbjct: 895 LFGFRFRSPPLPFLLSSLLQSRAHPKLSPDQGGNEGDSDIDLDDYSDIEQDEDEEEYDQL 954
Query: 432 PPFRVXXXXXXXXXXXXQRSAYLDELDYRETLYLKKQWKEGIRRQKLVEAQ---NVDA-- 486
PPF+ Q++AY DE DYR L KKQWK+ IRR K ++ + ++DA
Sbjct: 955 PPFKPLTKSQLARLTKEQKNAYFDEYDYRVKLLQKKQWKDEIRRLKEMKKRGKTDMDAYG 1014
Query: 487 -SNAVG----DDYEESVSPEVVHMSDMEIPSSFDSDYPVHRYRYL-ITDDMVFRPVLDPQ 540
+N G D E+VS V + DM +P SFD D P +RYR+L T ++ RPVLD
Sbjct: 1015 YANIAGENDLDPPPENVS---VPLPDMVLPPSFDCDNPTYRYRFLEPTSTVLARPVLDAH 1071
Query: 541 GWDHDIGFDGINFEVSQDLEKNTTASIAGQMRKDKEDLYIQSECSVSYS-GKNGRSLIGS 599
GWDHD G+DG++ E + L A++A Q+ KDK++ I + S+S G++ SL G
Sbjct: 1072 GWDHDCGYDGVSVEETLALLNKFPANMAVQVTKDKKEFSIHLDSSISAKLGEDASSLAG- 1130
Query: 600 MNMQTANKDLVCTVNGDARFHNLPWNTTGGGISITKFGSKYFTGAKLEDSITVGRRVQLV 659
++QT + L + G+ +F N+ N T GG S+T G TG K+ED +++G+R+ LV
Sbjct: 1131 FDIQTVGRQLAYILRGETKFKNIKKNKTTGGFSVTFLGDIVATGLKVEDQLSLGKRLALV 1190
Query: 660 GNAGRMVGCGQVAHGGGLEMTFRGKDYPVREESITVAATALSFEKETVISTNLQSDFRMG 719
+ G M G A+G LE + KDYP+ + T+ + + + ++ + NLQS F +G
Sbjct: 1191 ASTGAMRAQGDTAYGANLEARLKDKDYPIGQSLSTLGLSLMKWRRDLALGANLQSQFSIG 1250
Query: 720 RGSKVSVSANLNSRNLGRFCVKTSTSDHSEIALVAAVTLFQFFLR 764
RGSK+ V LN++ G+ V+TSTS+ +IAL+ + + R
Sbjct: 1251 RGSKMVVRLGLNNKLSGQITVRTSTSEQVQIALLGLIPVAASIYR 1295
>Os03g0835100 Similar to Chloroplast protein import component Toc159
Length = 745
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 267/759 (35%), Positives = 391/759 (51%), Gaps = 56/759 (7%)
Query: 48 VETVSANRFPSNDIRASDSEVTSSPSYE----PDHDSTKSDP--LKHVEALQIKFLRLVH 101
+E+ + P + V SSP E PD++ T+ + + V+ +IK+LRL+H
Sbjct: 7 IESSVPLQVPPTTVSVPRKNVASSPVLEVAPNPDNEMTEEERKLYRKVDVARIKYLRLIH 66
Query: 102 RTGVPPTTDVVAQVLYRLHLAN---LIKAGESDSKRTNLAINKARVIAAEQEAXXXXXXX 158
R G + QVLYRL L IK S+ + A A + EA
Sbjct: 67 RLGYDTEHHIAIQVLYRLSLVEGFRRIKVANHSSE-----LESAWKKALQLEAEGTEDLE 121
Query: 159 XXXXXXXXXKTGVGKSATINSIFDEPKVATNALAPATERIRRIDGTIKGIRVTVIDTPGL 218
KTGVGKSATINSIF E K T+A PAT ++ I G + G++ V+DTPGL
Sbjct: 122 FSCNVLVLGKTGVGKSATINSIFGEDKSKTSAFLPATTAVKEISGVVGGVKFRVVDTPGL 181
Query: 219 LPHYHRQRKNRKILHAVKRFIKRSPPDIVLYFERLDHINSRYCEYPLLKLITDILGSSMW 278
+ ++ NRK+L++VK++IKR PPD+VLY +R+D LL+ IT +LGSS+W
Sbjct: 182 GTTHMDEKSNRKVLNSVKKYIKRCPPDVVLYVDRIDTQRQDANNLSLLQCITSVLGSSIW 241
Query: 279 FNTVLVMTHCSSSPPEGPDGYPLEYDSYARYCKNVVQRHIQVAASNTQMENPVVLVDNHP 338
T++ +TH +++PPEGP G PL Y+ + + +Q+ I+ A ++ + EN LV+NH
Sbjct: 242 SKTIITLTHSAAAPPEGPSGIPLNYEMFVTQRTHAIQQSIRQATNDPRFENTSALVENHH 301
Query: 339 MCRRNTKGERVLPNGKVWVSEXXXXXXXXXXXAEANSL------------LKFQ----DS 382
+CRRNT+GE+VLPNG +W E NSL L+F+
Sbjct: 302 LCRRNTEGEKVLPNGLIWRRL-LLLLCYSVKTVETNSLSARVASPANLFSLRFRMPPLPH 360
Query: 383 FLLSQANTRXXXXXXXXXXXXXXXXXXXXEDVG-IDMTEV--SDDEDESDQLPPFRVXXX 439
FL S +R +DVG ID E+ D+ED+ DQLPPF+
Sbjct: 361 FLSSLLQSR------------EHPRCAADQDVGDIDPDELINEDEEDDYDQLPPFKPLSK 408
Query: 440 XXXXXXXXXQRSAYLDELDYRETLYLKKQWKEGIRRQK--LVEAQNVDA---SNAVGDDY 494
Q+ Y DE DYR L KKQ KE +RR K +E N D ++ D+Y
Sbjct: 409 SQVAKLSKEQQKLYFDEYDYRTKLLEKKQLKEQLRRLKEMKIEGNNHDVLGDNDNPDDEY 468
Query: 495 EESVSPEVVHMSDMEIPSSFDSDYPVHRYRYL-ITDDMVFRPVLDPQGWDHDIGFDGINF 553
E S M D +PSSFDSD P +RYR L + + R + +P GWDHD GFDG++
Sbjct: 469 ETERSV----MPDWALPSSFDSDDPAYRYRCLDPKPNFLVRAITNPDGWDHDCGFDGVSL 524
Query: 554 EVSQDLEKNTTASIAGQMRKDKEDLYIQSECSVSYSGKNGRSLIGSMNMQTANKDLVCTV 613
+ S D AS+ Q+ KDK + I S+S + S + ++QT L T+
Sbjct: 525 QYSLDAANAFPASLWVQVNKDKRESTIHLVSSISAKHRENVSSLAGFDIQTIMDQLAYTL 584
Query: 614 NGDARFHNLPWNTTGGGISITKFGSKYFTGAKLEDSITVGRRVQLVGNAGRMVGCGQVAH 673
G+++F N NTT GG+S+T G TGAK ED ++VG R+ L+ N G + G A+
Sbjct: 585 RGESKFKNSKKNTTTGGLSMTFLGDTMVTGAKFEDKLSVGDRLTLLANTGAVSIRGDTAY 644
Query: 674 GGGLEMTFRGKDYPVREESITVAATALSFEKETVISTNLQSDFRMGRGSKVSVSANLNSR 733
G +E T R KDY + ++ + A+ + + KE ++ L S F MGR S V+V +L ++
Sbjct: 645 GVNMEATLREKDYLMGQDLAILGASLVRWHKEWSMAAKLDSQFSMGRASNVAVHVDLTNK 704
Query: 734 NLGRFCVKTSTSDHSEIALVAAVTLFQFFLRRRTASTDK 772
GR +K +TS+ +IAL+ ++ + R D+
Sbjct: 705 LTGRVSIKANTSEQLKIALLGVCSMTMYLWNRMHPFIDR 743
>Os10g0548800 Similar to Chloroplast outer envelope protein-like (Chloroplast
outer envelope membrane-associated protein Toc120)
Length = 1008
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 194/309 (62%), Gaps = 4/309 (1%)
Query: 75 EPDHDSTKSDPLKH-VEALQIKFLRLVHRTGVPPTTDVVAQVLYRLHLANLIKAGESDSK 133
E D ++D ++ ++ +++KFLRL +R G P VV+QVLYRL LA ++ ++
Sbjct: 300 ESPEDGDENDEIREKLQMIRVKFLRLANRFGQTPNNMVVSQVLYRLGLAEQLR---RNTG 356
Query: 134 RTNLAINKARVIAAEQEAXXXXXXXXXXXXXXXXKTGVGKSATINSIFDEPKVATNALAP 193
+ + ++A+ +A EA KTGVGKSATINSIFD+ ++ TNA
Sbjct: 357 QGVFSFDRAQDMAERLEAAGNEPLDFSCTILVLGKTGVGKSATINSIFDDVRLETNAFDT 416
Query: 194 ATERIRRIDGTIKGIRVTVIDTPGLLPHYHRQRKNRKILHAVKRFIKRSPPDIVLYFERL 253
+T +++ + G ++GI+V VIDTPGL Q N+KIL++VKR I R+PPDIVLYF+RL
Sbjct: 417 STRKVQEVVGAVEGIKVKVIDTPGLSCSSSDQHHNQKILNSVKRLISRNPPDIVLYFDRL 476
Query: 254 DHINSRYCEYPLLKLITDILGSSMWFNTVLVMTHCSSSPPEGPDGYPLEYDSYARYCKNV 313
D Y + PLL+ IT + G+S+WFN ++V+TH +S+PP+G +G PL Y+ + +V
Sbjct: 477 DMQTRDYGDVPLLQTITRVFGASIWFNAIVVLTHAASAPPDGLNGIPLSYEMFVTQRSHV 536
Query: 314 VQRHIQVAASNTQMENPVVLVDNHPMCRRNTKGERVLPNGKVWVSEXXXXXXXXXXXAEA 373
VQ+ I+ AA + ++ NPV LV+NH CR N G+RVLPNG VW + AEA
Sbjct: 537 VQQAIRQAAGDVRLMNPVSLVENHSACRTNRAGQRVLPNGHVWKPQLLLLCFASKVLAEA 596
Query: 374 NSLLKFQDS 382
N+LLK QD+
Sbjct: 597 NALLKLQDN 605
Score = 242 bits (617), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 199/339 (58%), Gaps = 10/339 (2%)
Query: 431 LPPFRVXXXXXXXXXXXXQRSAYLDELDYRETLYLKKQWKEGIRRQKLVEAQNVDASNAV 490
LPPF+ QR AYL+ELDYRE L+ KKQ KE R+K+++ +AS A
Sbjct: 663 LPPFKRLTKAQLAKLNHAQRKAYLEELDYREKLFYKKQLKEERMRRKIMKKMAAEAS-AR 721
Query: 491 GDDYEES------VSPE--VVHMSDMEIPSSFDSDYPVHRYRYLIT-DDMVFRPVLDPQG 541
DD+ S +P V M DM +PSSFDSD+P HRYR+L T + + RPVL+ QG
Sbjct: 722 TDDFSNSNLEDDGSAPTNVAVPMPDMVLPSSFDSDHPSHRYRFLDTPSEWLVRPVLETQG 781
Query: 542 WDHDIGFDGINFEVSQDLEKNTTASIAGQMRKDKEDLYIQSECSVSYSGKNGRSLIGSMN 601
WDHD+G++G+N E ++ S++GQ+ KDK+D +Q E + S G++ ++
Sbjct: 782 WDHDVGYEGLNVERLFAVKGKVPLSVSGQLSKDKKDCSLQMEVASSLKHGEGKTTSLGLD 841
Query: 602 MQTANKDLVCTVNGDARFHNLPWNTTGGGISITKFGSKYFTGAKLEDSITVGRRVQLVGN 661
+Q+ KD+ T+ G++RF N N T GIS T G G K+ED + V ++++++ +
Sbjct: 842 LQSVGKDMAYTLRGESRFKNFRRNNTAAGISATLLGDSVSAGVKVEDKLVVNKQLRVLVS 901
Query: 662 AGRMVGCGQVAHGGGLEMTFRGKDYPVREESITVAATALSFEKETVISTNLQSDFRMGRG 721
G M G G VA+GG LE T + KDYP+ T+A + + + + + N+QS GR
Sbjct: 902 GGAMSGRGDVAYGGRLEATLKDKDYPIGRMLSTIALSVVDWHGDLAVGCNIQSQIPAGRA 961
Query: 722 SKVSVSANLNSRNLGRFCVKTSTSDHSEIALVAAVTLFQ 760
S + ANL+++ G+ ++ ++S+H EIAL+A V ++Q
Sbjct: 962 SNLIGHANLSNKGTGQVGIRLNSSEHLEIALIALVPIYQ 1000
>Os01g0356800 AIG1 domain containing protein
Length = 5436
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 117/189 (61%)
Query: 168 KTGVGKSATINSIFDEPKVATNALAPATERIRRIDGTIKGIRVTVIDTPGLLPHYHRQRK 227
K GVGKS INSI E K NA AT +R + + GI+V +IDTPGL + Q
Sbjct: 4921 KIGVGKSTVINSIMGEEKNKINAFDGATTNVRLVSSVVDGIKVNIIDTPGLRTNVMDQGW 4980
Query: 228 NRKILHAVKRFIKRSPPDIVLYFERLDHINSRYCEYPLLKLITDILGSSMWFNTVLVMTH 287
N+KIL V + K+ PPDI+LY +RLD ++ + + PLLK IT ILG+S+W NTV+ TH
Sbjct: 4981 NKKILSTVNSYTKKCPPDIILYVDRLDSWSNHFDDIPLLKTITTILGTSIWVNTVVTFTH 5040
Query: 288 CSSSPPEGPDGYPLEYDSYARYCKNVVQRHIQVAASNTQMENPVVLVDNHPMCRRNTKGE 347
+S PP+ +G P+ Y+++ ++VQ+ IQ A + + N V+N+ C+RN +G+
Sbjct: 5041 ANSIPPDNSNGDPMTYETFIAQRSHIVQQSIQQATGDMCLINAFSFVENYLYCKRNCQGK 5100
Query: 348 RVLPNGKVW 356
+VLP + W
Sbjct: 5101 KVLPTIQNW 5109
>Os03g0240500 Similar to Toc34-2 protein
Length = 327
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 13/195 (6%)
Query: 168 KTGVGKSATINSIFDEPKVATNALAPATERIRRIDGTIKGIRVTVIDTPGLLPHYHRQRK 227
K GVGKS+T+NSI E +A R T G + +IDTPGL+ +
Sbjct: 46 KGGVGKSSTVNSIVGERVATVSAFQSEGLRPMMCSRTRAGFTLNIIDTPGLIEGGY---I 102
Query: 228 NRKILHAVKRFIKRSPPDIVLYFERLDHINSRYCEYPLLKLITDILGSSMWFNTVLVMTH 287
N + + +KRF+ D++LY +RLD + +++ +T+ G ++W T++V+TH
Sbjct: 103 NEQAVEIIKRFLLGKTIDVLLYVDRLDAYRMDTLDDQVIRAVTNSFGKAIWRRTLVVLTH 162
Query: 288 CSSSPPEGPDGYPLEYDSYARYCKNVVQRHIQVAASNTQME-----NPVVLVDNHPMCRR 342
SPP+G L+Y+ + + R+I+ A ++ E P+ LV+N C+
Sbjct: 163 AQLSPPDG-----LDYNDFFTKRSESLLRYIRAGAGVSKRELGDFPLPIALVENSGRCKT 217
Query: 343 NTKGERVLPNGKVWV 357
N GE+VLP+G W+
Sbjct: 218 NENGEKVLPDGTPWI 232
>AK107288
Length = 189
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 1/158 (0%)
Query: 601 NMQTANKDLVCTVNGDARFHNLPWNTTGGGISITKFGSKYFTGAKLEDSITVGRRVQLVG 660
N+Q A K L + G+ + T GG +S+ G TG K+ED I+VG + L+
Sbjct: 18 NIQNAWKKLAYCIWGETTTKDTEHKTVGG-LSVMFLGDTMLTGVKIEDYISVGESLALLV 76
Query: 661 NAGRMVGCGQVAHGGGLEMTFRGKDYPVREESITVAATALSFEKETVISTNLQSDFRMGR 720
+ G M G A+G +E + K YP+ + + + + NLQS + + R
Sbjct: 77 SIGTMQAKGNTAYGVNMESRLKIKYYPINRLMLFFGLSLIKLHSAIALGINLQSQYLLRR 136
Query: 721 GSKVSVSANLNSRNLGRFCVKTSTSDHSEIALVAAVTL 758
SK+++ LN+ G+ +K STS +IAL+ V L
Sbjct: 137 HSKMALHIGLNTLRNGQINLKMSTSKMVQIALLGLVPL 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,851,983
Number of extensions: 949124
Number of successful extensions: 2334
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2319
Number of HSP's successfully gapped: 10
Length of query: 785
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 676
Effective length of database: 11,344,475
Effective search space: 7668865100
Effective search space used: 7668865100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)