Os03g0240500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Toc34-2 protein.
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Os03g0240500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Toc34-2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.08 | 0.364 | 11.4 | -0.122 | 1.48 | -0.456 | -0.507 | -0.854 | -0.433 | 18 | 0.3126 | 6312 | -- | -- |
| 58.13 | 0.355 | 11.3 | 0.00474 | 1.48 | -0.682 | -0.532 | -- | -0.436 | 17.9 | 0.4826 | 17038 | -- | -- |
| 59.1 | 0.358 | 11.4 | -0.116 | 1.49 | -0.437 | -- | -0.925 | -0.432 | 17.9 | 0.4323 | 11830 | -- | -- |
| 58.51 | 0.356 | 11.4 | -0.0116 | 1.48 | -0.688 | -- | -- | -0.455 | 17.9 | 0.4735 | 17034 | -- | -- |
| 173.22 | 0.613 | 11.3 | -0.121 | -- | -0.467 | -- | -0.723 | -0.462 | -- | 0.5546 | 16979 | -- | -- |
| 69 | 0.389 | 11.3 | -0.284 | 1.49 | -- | -0.421 | -- | -0.372 | 17.9 | -- | -- | -- | -- |
| 69.44 | 0.39 | 11.3 | -0.28 | 1.48 | -- | -- | -- | -0.373 | 17.9 | -- | -- | -- | -- |
| 173.25 | 0.613 | 11.3 | -0.0473 | -- | -0.672 | -- | -- | -0.472 | -- | 0.5242 | 16979 | -- | -- |
| 58.51 | 0.356 | 11.3 | -- | 1.49 | -0.692 | -- | -- | -0.452 | 17.9 | 0.4758 | 17033 | -- | -- |
| 183.4 | 0.633 | 11.3 | -0.325 | -- | -- | -- | -- | -0.407 | -- | -- | -- | -- | -- |
| 71.51 | 0.396 | 11.3 | -- | 1.49 | -- | -- | -- | -0.342 | 17.9 | -- | -- | -- | -- |
| 173.3 | 0.613 | 11.3 | -- | -- | -0.674 | -- | -- | -0.468 | -- | 0.4992 | 16979 | -- | -- |
| 186.18 | 0.637 | 11.3 | -- | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.12 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 4 | 57.82 | temperature | 25.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 7 | 58.16 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 16 |
| 8 | 58.16 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 16 |
| 9 | 58.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 16 |
| 10 | 58.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 16 |
| 13 | 58.26 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 18 |
| 16 | 58.28 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 20 | 58.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 55 | 58.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 62 | 58.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 68 | 58.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 21 |
| 98 | 58.62 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 117 | 58.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 124 | 58.66 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 154 | 58.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 207 | 58.74 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 213 | 58.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 256 | 58.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 258 | 58.80 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 259 | 58.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 271 | 58.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 279 | 58.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 358 | 58.95 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 359 | 58.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 360 | 58.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 363 | 58.95 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 364 | 58.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 400 | 59.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 404 | 59.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 408 | 59.13 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 409 | 59.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 410 | 59.13 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 414 | 59.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 415 | 59.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 416 | 59.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 417 | 59.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 423 | 59.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 430 | 59.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 432 | 59.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 450 | 59.19 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 459 | 59.19 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 8 |
| 464 | 59.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 467 | 59.21 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 468 | 59.21 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 476 | 59.21 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 478 | 59.21 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 483 | 59.21 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 17 |
| 490 | 59.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 499 | 59.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 15 |
| 523 | 59.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 571 | 59.28 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 593 | 59.30 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 669 | 59.36 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 711 | 59.38 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 799 | 59.46 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 809 | 59.48 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 2 | NA |
| 813 | 59.48 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 2 | NA |
| 818 | 59.49 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 2 | NA |
| 949 | 59.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 954 | 59.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 958 | 59.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 960 | 59.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 966 | 59.76 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 9 |