Os03g0835100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast protein import component Toc159.
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Os03g0835100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast protein import component Toc159.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.69 | 0.616 | 7.03 | 0.198 | 1.77 | 1.61 | -0.0856 | -2.4 | -0.455 | 6.34 | 40 | 10 | 3 | 23 |
| 195.29 | 0.651 | 7.03 | 0.238 | 1.78 | 1.59 | 0.26 | -- | -0.455 | 6.35 | 41.71 | 10 | 3.02 | 23 |
| 174.66 | 0.616 | 7.03 | 0.198 | 1.77 | 1.61 | -- | -2.36 | -0.465 | 6.33 | 40.55 | 10 | 3.02 | 23 |
| 195.4 | 0.651 | 7.03 | 0.228 | 1.76 | 1.59 | -- | -- | -0.457 | 6.28 | 42.72 | 9 | 3.08 | 22.9 |
| 319.81 | 0.833 | 7.04 | 0.136 | -- | 1.66 | -- | -2.18 | -0.33 | -- | 43.39 | 75 | 2.74 | 23.3 |
| 255.79 | 0.75 | 7.08 | 0.191 | 1.95 | -- | -1.11 | -- | -0.594 | 3.97 | -- | -- | -- | -- |
| 259.23 | 0.754 | 7.08 | 0.206 | 1.95 | -- | -- | -- | -0.587 | 4.07 | -- | -- | -- | -- |
| 259.34 | 0.75 | 7.08 | 0.196 | -- | 1.9 | -- | -- | -0.485 | -- | 9.519 | 458 | 2.15 | 24 |
| 196.94 | 0.654 | 7.04 | -- | 1.75 | 1.6 | -- | -- | -0.482 | 6.12 | 45.03 | 9 | 3.08 | 22.9 |
| 466.9 | 1.01 | 7.09 | 0.285 | -- | -- | -- | -- | -0.535 | -- | -- | -- | -- | -- |
| 260.35 | 0.755 | 7.08 | -- | 1.96 | -- | -- | -- | -0.61 | 4.07 | -- | -- | -- | -- |
| 260.32 | 0.751 | 7.08 | -- | -- | 1.91 | -- | -- | -0.501 | -- | 10 | 456 | 4.22 | 24 |
| 469.05 | 1.01 | 7.09 | -- | -- | -- | -- | -- | -0.567 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.69 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 5 | 183.76 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 7 | 185.78 | radiation | 40 | 30 | < th | dose independent | rect. | 3 | 23 |
| 8 | 185.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 9 | 188.40 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 9 |
| 10 | 188.86 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 14 | 190.48 | radiation | 1 | 30 | > th | dose dependent | sin | 22 | NA |
| 15 | 190.50 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 12 |
| 42 | 190.93 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 10 |
| 110 | 192.54 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 113 | 193.04 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 133 | 193.78 | radiation | 1 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 148 | 193.92 | radiation | 10 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 155 | 194.29 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 156 | 194.31 | radiation | 40 | 30 | < th | dose independent | rect. | 5 | 15 |
| 158 | 194.37 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 177 | 194.81 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 178 | 194.96 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 179 | 195.01 | radiation | 40 | 10 | < th | dose dependent | sin | 20 | NA |
| 181 | 195.07 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 205 | 195.34 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 288 | 195.60 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 8 |
| 291 | 195.77 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 17 |
| 292 | 195.82 | radiation | 20 | 10 | < th | dose independent | rect. | 5 | 19 |
| 293 | 195.92 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 294 | 195.92 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 392 | 196.16 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 17 |
| 400 | 196.30 | radiation | 30 | 90 | < th | dose independent | rect. | 12 | 23 |
| 527 | 196.90 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 689 | 197.54 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 704 | 197.81 | radiation | 40 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 722 | 197.87 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 746 | 198.10 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 764 | 198.29 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 768 | 198.36 | radiation | 10 | 10 | > th | dose independent | sin | 22 | NA |
| 819 | 199.06 | radiation | 20 | 10 | < th | dose independent | rect. | 5 | 17 |
| 829 | 199.15 | radiation | 10 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 884 | 199.64 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 7 |
| 888 | 199.68 | radiation | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 891 | 199.70 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 5 |
| 906 | 199.79 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 913 | 199.89 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 9 |
| 926 | 199.89 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 929 | 199.94 | radiation | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 971 | 200.39 | radiation | 30 | 90 | < th | dose independent | rect. | 15 | 20 |
| 977 | 200.42 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |