Os12g0197400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding protein, HSR1-related domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0197400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : GTP-binding protein, HSR1-related domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.77 | 0.181 | 12.9 | 0.164 | 0.634 | 0.233 | 0.0324 | -0.513 | -0.033 | 0.86 | 1010 | 5472 | -- | -- |
| 15.14 | 0.181 | 12.9 | 0.0413 | 0.644 | 0.253 | 0.0674 | -- | -0.0702 | 0.894 | 1006 | 8929 | -- | -- |
| 14.77 | 0.179 | 12.9 | 0.158 | 0.631 | 0.228 | -- | -0.533 | -0.0346 | 0.848 | 1010 | 5458 | -- | -- |
| 15.11 | 0.181 | 12.9 | 0.0508 | 0.636 | 0.255 | -- | -- | -0.0943 | 0.834 | 1005 | 8900 | -- | -- |
| 39.66 | 0.293 | 12.8 | 0.19 | -- | 0.194 | -- | -0.523 | -0.0239 | -- | 1012 | 6076 | -- | -- |
| 17.22 | 0.195 | 12.9 | -0.0388 | 0.63 | -- | 0.0324 | -- | -0.111 | 0.819 | -- | -- | -- | -- |
| 17.23 | 0.194 | 12.9 | -0.04 | 0.63 | -- | -- | -- | -0.112 | 0.815 | -- | -- | -- | -- |
| 39.91 | 0.294 | 12.9 | 0.0615 | -- | 0.343 | -- | -- | -0.0768 | -- | 1001 | 13222 | -- | -- |
| 15.02 | 0.18 | 12.9 | -- | 0.641 | 0.315 | -- | -- | -0.113 | 0.878 | 999.5 | 8946 | -- | -- |
| 42.04 | 0.303 | 12.9 | -0.017 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 17.27 | 0.194 | 12.9 | -- | 0.63 | -- | -- | -- | -0.107 | 0.812 | -- | -- | -- | -- |
| 39.95 | 0.294 | 12.9 | -- | -- | 0.303 | -- | -- | -0.0776 | -- | 1000 | 14586 | -- | -- |
| 42.05 | 0.303 | 12.9 | -- | -- | -- | -- | -- | -0.0982 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.50 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 2 | 14.50 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 16 | 14.60 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 17 | 14.60 | radiation | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 18 | 14.61 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 21 | 14.64 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 24 | 14.64 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 25 | 14.65 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 28 | 14.66 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 33 | 14.66 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 46 | 14.67 | wind | 5 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 48 | 14.67 | wind | 5 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 49 | 14.67 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 50 | 14.67 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 52 | 14.68 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 54 | 14.68 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 60 | 14.69 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 66 | 14.69 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 70 | 14.69 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 90 | 14.70 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 91 | 14.70 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 110 | 14.71 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 112 | 14.71 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 7 |
| 122 | 14.71 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 129 | 14.72 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 140 | 14.72 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 141 | 14.72 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 142 | 14.72 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 154 | 14.73 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 155 | 14.73 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 158 | 14.73 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 170 | 14.73 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 171 | 14.73 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 177 | 14.73 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 183 | 14.73 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 184 | 14.73 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 13 | 14 |
| 187 | 14.73 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 197 | 14.74 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 198 | 14.74 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 215 | 14.74 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 227 | 14.74 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 15 | 11 |
| 255 | 14.74 | wind | 5 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 262 | 14.75 | atmosphere | 1010 | 4320 | > th | dose independent | sin | 14 | NA |
| 303 | 14.75 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 320 | 14.75 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 11 | NA |
| 339 | 14.76 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 340 | 14.76 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 383 | 14.76 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 18 |
| 403 | 14.77 | atmosphere | 1010 | 4320 | < th | dose independent | sin | 14 | NA |
| 455 | 14.77 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 21 |
| 474 | 14.78 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 532 | 14.78 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 558 | 14.79 | wind | 5 | 14400 | < th | dose independent | sin | 15 | NA |
| 605 | 14.79 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 17 |
| 641 | 14.80 | wind | 5 | 14400 | > th | dose independent | sin | 15 | NA |
| 644 | 14.80 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 5 | NA |
| 646 | 14.80 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 647 | 14.80 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 649 | 14.80 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 700 | 14.80 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 782 | 14.81 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 798 | 14.81 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 810 | 14.81 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 826 | 14.82 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 16 | 5 |
| 831 | 14.82 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 857 | 14.82 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 883 | 14.82 | radiation | 30 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 902 | 14.82 | radiation | 30 | 4320 | < th | dose dependent | rect. | 19 | 13 |