BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0179700 Os12g0179700|AK073945
(111 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0179700 Conserved hypothetical protein 228 7e-61
Os02g0639850 148 7e-37
Os07g0663200 Conserved hypothetical protein 119 3e-28
Os01g0352000 115 5e-27
Os11g0573700 RNA-directed DNA polymerase (Reverse transcrip... 108 6e-25
Os05g0372700 108 8e-25
Os03g0849400 108 1e-24
Os12g0567900 107 2e-24
Os05g0311201 106 5e-24
Os05g0326900 105 8e-24
Os05g0124600 Conserved hypothetical protein 105 9e-24
Os06g0680100 101 1e-22
Os02g0118800 Conserved hypothetical protein 101 1e-22
Os09g0536600 101 1e-22
Os02g0552500 87 2e-18
Os03g0842400 Conserved hypothetical protein 70 2e-13
Os12g0511900 67 4e-12
Os01g0117000 Protein kinase-like domain containing protein 62 7e-11
>Os12g0179700 Conserved hypothetical protein
Length = 111
Score = 228 bits (581), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 VFRVLTSSATGSVLISSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFD 60
VFRVLTSSATGSVLISSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFD
Sbjct: 1 VFRVLTSSATGSVLISSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFD 60
Query: 61 SACMLICWQIWKERNARVFDQRSRSPNQLAEAIKEEILVWKEAGYFENCSS 111
SACMLICWQIWKERNARVFDQRSRSPNQLAEAIKEEILVWKEAGYFENCSS
Sbjct: 61 SACMLICWQIWKERNARVFDQRSRSPNQLAEAIKEEILVWKEAGYFENCSS 111
>Os02g0639850
Length = 410
Score = 148 bits (374), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/94 (71%), Positives = 75/94 (79%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VW L+R WI+ FPIPG LTEWW+QAR FR CYR NFDS CML+CW +WKERNAR
Sbjct: 317 VWSLLRNWINVPFPIPGRSELGLTEWWMQARLRFRHCYRDNFDSVCMLVCWTVWKERNAR 376
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEAGYFENCSS 111
VFDQRSR P QLAEAIKEE+L+WKEAGYFE +S
Sbjct: 377 VFDQRSRIPEQLAEAIKEEVLLWKEAGYFETNNS 410
>Os07g0663200 Conserved hypothetical protein
Length = 232
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 64/90 (71%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VW LMR WIS FPIPG + L +WW +AR CFR YR FD+ ML+CW IWKERNAR
Sbjct: 138 VWELMRAWISVDFPIPGQIDCSLIDWWFEARRCFRTGYREIFDAVLMLVCWLIWKERNAR 197
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEAGYFE 107
+F+QR RSP QL E IKEEI VW+ A F+
Sbjct: 198 IFEQRLRSPEQLVEDIKEEINVWRSAAVFK 227
>Os01g0352000
Length = 305
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 67/97 (69%)
Query: 10 TGSVLISSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQ 69
G + +VWR++R+W SA F IP E L++WWL R FR YRT+FDSA MLICW
Sbjct: 204 VGCDYMVAVWRIIRRWCSASFAIPADEENTLSDWWLATRRRFRTSYRTDFDSAFMLICWL 263
Query: 70 IWKERNARVFDQRSRSPNQLAEAIKEEILVWKEAGYF 106
IWKE NARVF S+SP QLAE IK+EI +W+ AG F
Sbjct: 264 IWKELNARVFQHVSKSPEQLAEDIKQEIAIWRVAGIF 300
>Os11g0573700 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 700
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 62/94 (65%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VWR+M+ WI F +P L +WW++AR FR YR+ FDS L CW +WKERNAR
Sbjct: 604 VWRMMQGWIGINFLLPTENEPALADWWMKARMAFRTGYRSIFDSVFALTCWLLWKERNAR 663
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEAGYFENCSS 111
VF+Q+ RS QL + IKEE +VWK AG F C+S
Sbjct: 664 VFEQKFRSMEQLVQDIKEEAIVWKTAGVFTTCNS 697
>Os05g0372700
Length = 166
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 10 TGSVLISSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQ 69
G ++VWR++R+W +A FPI E L +WWL R CFR YRT+FDSA MLICW
Sbjct: 76 VGCDFTAAVWRIIRRWCNASFPIAADEENTLADWWLATRRCFRISYRTDFDSAFMLICWL 135
Query: 70 IWKER-NARVFDQRSRSPNQLAEAIKEEILV 99
IWKER NAR+F S++P+QLAE IKEEI V
Sbjct: 136 IWKERNNARLFQHVSKTPDQLAEDIKEEIAV 166
>Os03g0849400
Length = 645
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 60/90 (66%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VW+L+R W++ FP+PG L WW+ AR FR YR+NFDS L CW IWKERNAR
Sbjct: 554 VWQLLRAWVNVDFPLPGQAGEGLIGWWMVARCHFRSSYRSNFDSVFALTCWLIWKERNAR 613
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEAGYFE 107
+F + ++ QL E IKEE+ +WK GYF+
Sbjct: 614 IFQHKQQTVEQLLEDIKEEVWMWKSGGYFQ 643
>Os12g0567900
Length = 341
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 60/90 (66%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VW+L+R W++ FP+PG L WW+ AR FR YR+NFDS L CW IWKERNAR
Sbjct: 250 VWQLLRAWVNVDFPLPGQAGEGLIGWWMVARCHFRSSYRSNFDSVFALTCWLIWKERNAR 309
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEAGYFE 107
+F + ++ QL E IKEE+ +WK GYF+
Sbjct: 310 IFQHKQQTVEQLLEDIKEEVWMWKSGGYFQ 339
>Os05g0311201
Length = 168
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%)
Query: 16 SSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERN 75
++VWR +++W + FPIP + L +WWL R F+K YR +FD A MLICW IWKERN
Sbjct: 73 TAVWRSIKRWCNESFPIPADGDAALADWWLATRCRFQKSYRADFDCAFMLICWLIWKERN 132
Query: 76 ARVFDQRSRSPNQLAEAIKEEILVWKEAGYF 106
AR+F + P+QLAE IK+EI VW+ AG F
Sbjct: 133 ARIFQHVYKLPDQLAEDIKDEIAVWRVAGVF 163
>Os05g0326900
Length = 355
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 60/91 (65%)
Query: 16 SSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERN 75
++VWR MR W +A F IP +N L EWWL R FR YRT+FDSA MLICW IWKERN
Sbjct: 233 AAVWRKMRAWCNANFTIPADKNRSLAEWWLTERRRFRTSYRTDFDSAFMLICWVIWKERN 292
Query: 76 ARVFDQRSRSPNQLAEAIKEEILVWKEAGYF 106
AR+F SR+ L + I EE VW+ AG F
Sbjct: 293 ARIFQNVSRTHESLEDDITEETAVWRVAGDF 323
>Os05g0124600 Conserved hypothetical protein
Length = 130
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 58/84 (69%)
Query: 23 RQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNARVFDQR 82
R+W +A F P E L +WWL R CFR YRT+FDSA MLICW IWKERNA++F
Sbjct: 42 RRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFDSAFMLICWLIWKERNAKIFQHV 101
Query: 83 SRSPNQLAEAIKEEILVWKEAGYF 106
S++ +QLAE IKEEI VW AG F
Sbjct: 102 SKTLDQLAEDIKEEIAVWGVAGIF 125
>Os06g0680100
Length = 273
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 63/86 (73%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VW L+R WI FP+PG +N +WW++AR+CF+ R FDS C+LICW +W+ERN R
Sbjct: 181 VWGLVRTWIGTSFPLPGEDNWEFADWWMKARSCFQTRSRGAFDSLCLLICWFVWRERNFR 240
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEA 103
+F+Q++R+ +L IK+E++VW+EA
Sbjct: 241 IFEQKTRTALELFRDIKDEVVVWREA 266
>Os02g0118800 Conserved hypothetical protein
Length = 212
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VWR+M+ WI F +P L +WW++AR FR YR+ FDS L CW +WKE NAR
Sbjct: 116 VWRMMQGWIGINFLLPTENEPALADWWMKARMAFRTGYRSIFDSVFALTCWLLWKECNAR 175
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEAGYFENCSS 111
VF+Q+ RS QL + IKEE +VWK G F C+S
Sbjct: 176 VFEQKFRSIEQLVQDIKEEAIVWKTTGVFTTCNS 209
>Os09g0536600
Length = 581
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 60/91 (65%)
Query: 16 SSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERN 75
+ VWR +R W+ FP+P T L++WWL R+ R YR++FD MLICW +WKERN
Sbjct: 486 TEVWRRIRGWLGVDFPLPAEMATPLSDWWLTVRSRCRLSYRSDFDCLFMLICWIVWKERN 545
Query: 76 ARVFDQRSRSPNQLAEAIKEEILVWKEAGYF 106
AR+F SR+ QL + I+EEI VWK AG F
Sbjct: 546 ARIFQNVSRTAQQLVQDIREEIEVWKAAGIF 576
>Os02g0552500
Length = 433
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VWR+++ W +P L EWWL A + R FD+ +L+CW +WKERNAR
Sbjct: 301 VWRMIKGWAGIGIQLPAEAGLELGEWWLLAWQGVQTSCRGAFDTLVLLVCWMVWKERNAR 360
Query: 78 VFDQRSRSPNQLAEAIKEEILVWKEAGYFE 107
VF +SR+ L IKEE++VWKEAG F+
Sbjct: 361 VFQSQSRTAGSLFALIKEEVVVWKEAGVFK 390
>Os03g0842400 Conserved hypothetical protein
Length = 116
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%)
Query: 18 VWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNAR 77
VW LM++WI F P +T LTEWW+ AR F YR FD L CW +WKERNAR
Sbjct: 51 VWTLMQRWIGIGFAPPTINDTSLTEWWMAARLNFWTGYRDIFDGVFALTCWFLWKERNAR 110
Query: 78 VFDQR 82
VF+Q+
Sbjct: 111 VFEQK 115
>Os12g0511900
Length = 1330
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 11 GSVLISSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQI 70
G VL +R W+ P L WW AR +K R FD+ +L+ W I
Sbjct: 1235 GVVLTHKKCASIRGWLGLCCSTPMES---LPSWWCDARKAIKKRDRRAFDAGIILVTWLI 1291
Query: 71 WKERNARVFDQRSRSPNQLAEAIKEEILVWKEAG 104
WK+RNARVF+ + P L AI++E +W+EAG
Sbjct: 1292 WKQRNARVFEGHTVLPVNLCAAIEDEWKLWQEAG 1325
>Os01g0117000 Protein kinase-like domain containing protein
Length = 712
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 14 LISSVWRLMRQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKE 73
+ +VW +R + P P S+ WW +AR K R FD+ +LI W IWKE
Sbjct: 517 FVPAVWESVRDRLGLRCPKPASD---FQGWWCEARKKIAKIDRKTFDAGIILITWLIWKE 573
Query: 74 RNARVFDQRSRSPNQLAEAIKEEILVWKEA 103
RNARVF+ + S + L AI++E WK A
Sbjct: 574 RNARVFEGVATSSSLLCAAIEDEWESWKAA 603
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.132 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,065,485
Number of extensions: 145754
Number of successful extensions: 548
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 19
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)