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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0124600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0111) R2 : 0.00354
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0298 (0.0234) R2dN8 : 0.00458 R2N8 : 0.00354
σ : 0.21
deviance : 20.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.03 0.205 2.89 0.0479 0.0121 -0.137 0.238 0.063 0.0638 12.9 26.49 671 -- --
19.03 0.203 2.89 0.037 0.00958 -0.135 0.231 -- 0.0589 13.2 26.53 679 -- --
19.26 0.204 2.89 0.0513 0.00977 -0.139 -- 0.0323 0.0651 12.8 26.5 681 -- --
19.26 0.204 2.89 0.0424 0.0103 -0.138 -- -- 0.0602 12.7 26.52 679 -- --
19.27 0.204 2.89 0.0436 -- -0.141 -- 0.00198 0.0608 -- 26.5 681 -- --
19.7 0.208 2.89 -0.00644 0.0713 -- 0.217 -- 0.0295 9.72 -- -- -- --
19.84 0.209 2.89 0.000622 0.0781 -- -- -- 0.0291 8.3 -- -- -- --
19.27 0.204 2.89 0.0433 -- -0.141 -- -- 0.0607 -- 26.53 681 -- --
19.31 0.205 2.89 -- 0.0137 -0.126 -- -- 0.0567 11.4 26.54 679 -- --
20.18 0.21 2.9 0.00113 -- -- -- -- 0.03 -- -- -- -- --
19.84 0.208 2.89 -- 0.0781 -- -- -- 0.0291 8.3 -- -- -- --
19.31 0.205 2.89 -- -- -0.133 -- -- 0.0546 -- 26.52 681 -- --
20.18 0.21 2.9 -- -- -- -- -- 0.0298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.12 atmosphere 1000.0 90 < th dose independent rect. 8 1
2 18.12 atmosphere 1000.0 10 < th dose independent rect. 9 1
15 18.15 atmosphere 1000.0 270 < th dose independent rect. 6 1
26 18.22 atmosphere 1000.0 30 < th dose dependent rect. 9 1
74 18.33 atmosphere 1000.0 270 < th dose dependent rect. 6 1
104 18.58 wind 9.0 10 > th dose independent rect. 18 1
110 18.58 wind 9.0 10 > th dose dependent rect. 18 1
123 18.61 radiation 1.0 10 > th dose dependent rect. 18 1
216 18.70 humidity 60.0 270 > th dose independent rect. 14 12
217 18.71 humidity 90.0 1440 > th dose dependent rect. 10 3
292 18.74 atmosphere 1000.0 720 < th dose dependent rect. 22 3
300 18.76 humidity 90.0 1440 > th dose independent rect. 10 3
303 18.76 atmosphere 1000.0 720 < th dose dependent rect. 22 1
306 18.76 atmosphere 1005.0 10 > th dose dependent rect. 22 11
308 18.77 precipitation 0.1 1440 > th dose independent rect. 9 1
311 18.77 precipitation 0.1 1440 > th dose dependent rect. 9 1
324 18.80 temperature 20.0 90 < th dose dependent rect. 22 13
336 18.82 atmosphere 1010.0 10 < th dose independent rect. 24 23
345 18.84 temperature 15.0 270 > th dose independent rect. 5 22
348 18.84 temperature 20.0 90 < th dose dependent rect. 22 8
354 18.84 radiation 1.0 30 > th dose dependent rect. 17 14
372 18.85 temperature 20.0 90 < th dose dependent sin 8 NA
383 18.86 humidity 60.0 270 > th dose independent sin 15 NA
387 18.86 atmosphere 1010.0 10 < th dose independent rect. 18 14
405 18.87 humidity 80.0 90 > th dose dependent rect. 22 2
413 18.87 temperature 10.0 90 > th dose dependent rect. 24 22
416 18.88 atmosphere 1000.0 10 > th dose independent rect. 24 23
430 18.89 atmosphere 1000.0 720 < th dose independent rect. 23 2
432 18.89 atmosphere 1000.0 720 < th dose independent rect. 22 4
436 18.89 temperature 15.0 1440 > th dose independent rect. 15 7
441 18.89 atmosphere 1000.0 720 > th dose independent rect. 21 10
460 18.90 humidity 90.0 1440 < th dose independent rect. 10 3
488 18.91 atmosphere 1015.0 1440 < th dose independent rect. 1 8
492 18.91 atmosphere 1005.0 10 > th dose dependent sin 7 NA
503 18.92 atmosphere 1000.0 720 > th dose independent rect. 19 14
526 18.92 temperature 30.0 90 < th dose dependent rect. 22 20
533 18.93 temperature 15.0 270 > th dose independent rect. 22 23
542 18.93 atmosphere 1005.0 270 > th dose dependent rect. 3 3
564 18.94 humidity 80.0 10 > th dose independent rect. 23 1
565 18.94 atmosphere 1005.0 10 > th dose independent rect. 23 1
567 18.94 atmosphere 1015.0 1440 < th dose independent rect. 3 6
571 18.94 temperature 15.0 720 > th dose independent rect. 9 17
576 18.94 temperature 30.0 90 < th dose dependent rect. 22 2
580 18.94 atmosphere 1005.0 10 > th dose dependent rect. 5 4
599 18.95 atmosphere 1010.0 10 < th dose independent rect. 2 6
601 18.95 temperature 15.0 10 > th dose independent rect. 18 11
611 18.95 atmosphere 995.0 10 > th dose dependent rect. 23 1
639 18.96 temperature 15.0 270 > th dose independent rect. 15 13
660 18.96 humidity 90.0 1440 > th dose dependent rect. 6 10
674 18.97 radiation 1.0 10 > th dose independent rect. 18 1
701 18.97 atmosphere 1010.0 10 < th dose independent rect. 14 18
703 18.97 wind 9.0 10 < th dose independent rect. 24 23
707 18.97 temperature 20.0 270 < th dose dependent rect. 22 1
715 18.97 temperature 20.0 270 < th dose dependent rect. 22 3
716 18.97 temperature 20.0 30 < th dose dependent rect. 23 3
740 18.97 temperature 20.0 90 < th dose dependent rect. 12 18
747 18.97 radiation 40.0 10 > th dose dependent rect. 12 22
751 18.98 temperature 15.0 720 > th dose independent rect. 9 10
757 18.98 temperature 15.0 90 > th dose independent rect. 9 18
764 18.98 wind 7.0 10 < th dose dependent rect. 23 1
770 18.98 atmosphere 1005.0 10 > th dose dependent rect. 5 2
772 18.98 humidity 80.0 14400 > th dose dependent rect. 4 3
783 18.98 humidity 80.0 14400 > th dose dependent rect. 3 5
819 18.99 wind 1.0 30 > th dose independent rect. 23 1
820 18.99 wind 5.0 10 < th dose independent rect. 23 1
822 18.99 precipitation 0.1 1440 < th dose independent rect. 24 1
824 18.99 temperature 10.0 43200 > th dose independent rect. 9 6
839 18.99 precipitation 0.1 1440 < th dose dependent rect. 24 1
850 18.99 temperature 30.0 90 < th dose dependent rect. 16 9
868 18.99 temperature 15.0 10 > th dose dependent rect. 14 15
879 19.00 temperature 15.0 270 > th dose independent rect. 21 14
886 19.00 temperature 15.0 10 > th dose independent rect. 24 23
933 19.00 temperature 15.0 90 > th dose dependent rect. 14 15
937 19.00 temperature 10.0 90 > th dose dependent rect. 13 23
947 19.01 temperature 15.0 720 > th dose independent rect. 8 13
957 19.01 radiation 40.0 30 > th dose dependent sin 11 NA
971 19.01 humidity 70.0 1440 > th dose dependent rect. 6 4